HLA
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HLA20
CODE
PROBE
ACC.N
MAP
UCSC May 2004
REMARKS
B-A





HyA inversion
6D
 RP11-705A19 BES 6p21.31 chr6:36,310,583-36,488,793 HLA20ptel&20qcen

RP11-589O20 BES 6p21.31 chr6:36,415,804-36,582,383
6E
 RP11-1007C6 AL096814 6p21.1 chr6:42,208,848-42,375,930
B-N
NLE
 CH271-131D24 BES
chr6:46,328,189/chr2:169,123,279 HLA20p &1p
CH271-346A15 BES
chr6:46,189,170/chr2:168,877,742
6F
 RP11-346L9 AQ529341 6p12.1 chr6:57,351,232-57,548,984
RP11-436G23 BES 6p12.1 chr6:57,458,841-57,624,340 HLA20pcen&3qcen
RP11-791F20 BES 6p12.1 chr6:57,500,124-57,690,152

CENTROMERE




B-A





HyA inversion
6D
RP11-705A19
 BES 6p21.31 chr6:36,310,583-36,488,793 HLA20ptel&20qcen
6C
RP11-838C16
 BES 6p21.31 chr6:36,102,002-36,266,742

RP11-353P17 BES 6p21.33 chr6:31,825,837-32,032,233

RP11-297M4 BES 6p22.1 chr6:29,016,624-29,189,711


Primate ancestral centromere
chr6

RP11-261L19 BES 6p22.1 chr6:29,259,359-29,405,414

RP11-698O17
 BES 6p22.1 chr6:27,133,997-27,314,896
6B
 RP11-911D8
6p22.1 chr6:27,069,535-27,253,168
B-N
NLE
 CH271-362G10 BES
chr6:27,185,623/chr9:30,805,802 HLA20q&13p

RP11-4A24 AL137221 6p24.1 chr6:12,238,011-12,244,433
6A
RP11-328C17
 AL365272 6p25.3 chr6:213,636-346,084

Legend. HLA ideogram (left) showing the synteny block correspondence with the human chromosome(s) (right). Internal red numbers indicate the human corresponding chromosome. Blue and red arrows indicate concordant (blue) and inverse (red) sequence polarity (orientation) with respect to humans. Black numbers (chromosome) followed by a letter (BAC), on the right, indicate specific BACs as reported in the Supplemental Table S1.

B-H Breaks in lineages leading to HSA
B-L Breaks in lineages leading to Lar
 HyA: Hylobatidae ancestor
B-A Breaks in hylobatidae ancestor
B-N Breaks in lineages leading to Nomascus
Splitting clones

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