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HLA1

CODE PROBE ACC.N MAP UCSC May 2004 REMARKS 2V RP11-463B12 AC013469 2q37.3 chr2:240,631,266-240,802,685 2U RP11-449J2 AC013274 2q32.1 chr2:196,328,143-196,453,275 RP11-504O20 AC016751 2q31.1 chr2:176,500,487-176,676,865 B-N NLE CH271-131D24 BES chr2:169,123,279-(chr6:46,328,189) HLA1p&20p 2T RP11-11N16 BES 2q24.3 chr2:169,016,879-169,207,143 B-N NLE CH271-346A15 BES chr2:168,877,742-(chr6:46,189,170) HLA1p&20p 2S RP11-717H1 BES 2q23.2 chr2:150,112,110-150,286,763 HLA1&12 B-A NLE CH271-312A20 BES chr2:150,263,748-chr7:2,548,150 HyA translocation HLA1p CH271-94G24 BES chr2:150,234,765-chr7:2,550,913 7B RP11-745M18 AC092488 7p22.2 chr7:2,324,670-2,416,104 HLA1&12 7C RP11-1080O3 BES 7p22.1 chr7:6,198,794-6,420,463 B-H HSA inversion 7P RP11-150J17 BES 7p21.3 chr7:97,342,881-97,518,601 Q RP11-28D5 BES 7q22.1 chr7:101,300,598 - 101,472,822 B-H HSA inversion 7K RP11-70L14 BES 7q11.2 chr7:75,740,187-75,908,961 7J RP11-105P18 BES 7q11.2 chr7:68,287,800-68,447,557 CENTROMERE chr7:57,864,989-60,864,988 7I RP11-339F13 AC073324 7p11.2 chr7:55,029,594-55,154,846 7H RP11-351I12 BES 7p13 chr7:45,206,880-45,375,733 7G RP11-788M13 BES 7p14.3 chr7:34,301,135-34,464,217 RP11-112E16 AC007036 7p15.1 chr7:29,914,923-30,082,622 B-N NLE CH271-119L23 BES chr7:22,955,431(chr19:44,062,149) HLA1&10 7F RP11-64D10 BES 7p15.3 chr7:22,755,189-22,927,783 RP11-486P11 AC007001 7p21.1 chr7:19,848,894-19,957,311 7E RP4-755G17 AC004879 7p21.3 chr7:9,958,478-10,093,381 7D RP11-1119G2 BES 7p22.1 chr7:6,797,867-6,941,440 B-H HSA inversion 7O RP11-652L7 BES 7q21.3 chr7:96,863,905-97,070,408 RP11-215P16 AC006036 7q21.1 chr7:90,123,735-90,280,574 7N RP11-580C19 BES 7q21.1 chr7:82,956,817-83,134,941 7M RP11-105M6 BES 7q21.1 chr7:79,661,210-79,809,729 7L RP11-982E3 BES 7q11.2 chr7:76,494,214-76,685,936 B-H HSA inversion 7R RP11-803J14 BES 7q22.1 chr7:101,791,124-102,097,972 7S RP11-701M1 BES 7q31.1 chr7:110,865,568-111,061,152 RP11-81B7 BES 7q31.3 chr7:126,695,314-126,866,526 RP5-839B19 AC006347 7q34 chr7:139,964,288-140,034,062 7T RP11-343G15 BES 7q36.1 chr7:151,179,906-151,359,833

Legend. HLA ideogram (left) showing the synteny block correspondence with the human chromosome(s) (right). Internal red numbers indicate the human corresponding chromosome. Blue and red arrows indicate concordant (blue) and inverse (red) sequence polarity (orientation) with respect to humans. Black numbers (chromosome) followed by a letter (BAC), on the right, indicate specific BACs as reported in the Supplemental Table S1.

B-H Breaks in lineages leading to HSA	B-L Breaks in lineages leading to Lar	HyA: Hylobatidae ancestor
B-A Breaks in hylobatidae ancestor	B-N Breaks in lineages leading to Nomascus	Splitting clones

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