HLA-13

HLA

HLA13

	CODE	PROBE	ACC.N	MAP	UCSC May 2004	REMARKS
B-L						HLA translocation
	17J	RP11-141D12		17q21.33	chr17:45,808,833-45,967,387	HLA13ptel&13p
		RP11-170D6	AC091154	17q22	chr17:48,430,427-48,606,237
		RP11-758H9	AC091271	17q23.2	chr17:55,012,846-55,148,629
	17K	RP11-42F20	AC008158	17q23.3	chr17:57,449,286-57,597,398
B-H
	17H	RP11-115K3	AC113211	17q12	chr17:33,140,726-33,322,352
	17G	RP11-164M10	BES	17q11.2	chr17:27,245,835-27,416,284
		RP11-60K16	BES	17q11.2	chr17:26,877,604-27,053,303
	17F	RP11-915B21	BES	17q11.2	chr17:23,775,934-23,916,688
B-A						HyA inversion
	17J	RP11-141D12	BES	17q21.33	chr17:45,808,833-45,967,387	HLA13p&13ptel
		RP11-456D7	AC027152	17q21.32	chr17:43,587,728-43,720,471
		RP11-15D16	BES	17q21.31	chr17:42,268,664-42,444,503
	17I	RP11-15P20	BES	17q12	chr17:34,153,641-34,333,532
B-L						HLA translocation
	9G	RP11-671K21	BES	9p13.2	chr9:38,241,473-38,423,166
		RP11-58A20		9p13.2	chr9:36,392,179-36,539,166
		RP11-754H8	BES	9p13.3	chr9:34,352,812-34,550,438
	9F	RP11-976P13	BES	9p21.1	chr9:30,838,876-31,023,309
B-N	NLE	CH271-362G10	BES		chr9:30,805,802- chr6:27,185,623	HLA13p &20qweak
	9E	RP11-1006E22	BES	9p21.2	chr9:27,142,243-27,331,367	HLA13p &8q
B-A						HyA inversion
			CENTROMERE
B-A						HyA inversion
	9I	RP11-876N18		9q21.11	chr9:68,871,474-69,076,493	HLA13qcen&8q
		RP11-725M24	AL355152	9q21.13	chr9:74,083,433-74,201,583
	9J	RP11-401F12	AL159996	9q21.33	chr9:86,540,663-86,729,019
		RP11-51N4	BES	9q22.31	chr9:92,822,910-92,996,477
	9K	RP11-106N7	BES	9q22.33	chr9:97,924,515-98,093,688
	9L	RP11-1056O18	BES	9q31.2	chr9:105,592,991-105,774,178
	9M	RP11-845A4	BES	9q31.3	chr9:111,345,483-111,546,299
B-N	NLE	CH271-131G15	BES		chr9:111,392,119/chr9:22,241,811	HLA13q&8q
	9N	RP11-456D21	AL162423	9q33.2	chr9:121,918,375-122,006,697
	9O	RP11-469E24	AL353636	9q34.3	chr9:135,951,430-136,022,967

Legend. HLA ideogram (left) showing the synteny block correspondence with the human chromosome(s) (right). Internal red numbers indicate the human corresponding chromosome. Blue and red arrows indicate concordant (blue) and inverse (red) sequence polarity (orientation) with respect to humans. Black numbers (chromosome) followed by a letter (BAC), on the right, indicate specific BACs as reported in the Supplemental Table S1.

B-H Breaks in lineages leading to HSA	B-L Breaks in lineages leading to Lar	HyA: Hylobatidae ancestor
B-A Breaks in hylobatidae ancestor	B-N Breaks in lineages leading to Nomascus	Splitting clones

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