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HLA7


CODE
PROBE
ACC.N
MAP
UCSC May 2004
REMARKS

12C
RP11-159P10
BES
12p11.2
chr12:31,198,874-31,342,927
HLA7pq &crosshyb
12A
RP11-283I3
AC007406
12p13.33
chr12:152,513-329,906


RP11-691J6

12p13.31
chr12:5,200,006-5,384,129


RP11-1151C11

12p13.2
chr12:10,216,705-10,362,378


RP11-502N13
AC008114
12p13.1
chr12:14,521,905-14,648,407

RP11-107N3
BES
12p12.2
chr12:20,867,962-21,040,355


RP11-37P8
BES
12p12.1
chr12:25,122,847-25,317,798

12B
RP11-154D14
BES
12p11.21
chr12:30,619,680-30,811,008


CENTROMERE



Neocentromere
12C
RP11-159P10

12p11.21
chr12:31,198,874-31,342,927
HLA7pq &crosshyb

RP11-956A19
BES
12p11.21
chr12:32,174,023-32,364,216

12D
RP11-453B19
BES
12p11.1
chr12:34,319,010-34,493,774
HLA7q&crosshyb
B-A





HyA fission
B-L





HLA fusion
B-A





HyA fission
1D
RP11-348G20
BES
1p35.2
chr1:30,725,815-30,917,269


RP11-1078B7
BES
1p35.2
chr1:30,921,156-31,109,640


RP11-384C14
BES
1p34.2
chr1:41,145,530-41,311,184

1M
RP11-35B4
AL359093

duplicated in HSA
HLA7q&crosshyb&5&9

RP11-492I2
AL583843
1p33
chr1:50,279,681-50,341,943

1E
RP11-978G17
BES
1p32.3
chr1:51,896,963-52,074,114

B-A
NLE
CH271-148E8
BES

chr1:52,253,969-chr1:177,709,354
HLA7q
1P
RP11-453M18
BES
1q25.3
chr1:177,774,617-177,954,344
HLA17q&19p
1O
RP11-152A16
AL359749
1q25.2
chr1:175,804,857-175,986,939

1N
RP11-8D14
AC068728
1q23.3
chr1:157,471,001-157,634,916
7q&5q
B-L





HLA translocation
3F
RP11-78B21
BES
3p14.3
chr3:56,264,895-56,398,815
HLA7q &crosshyb

RP11-770C13
BES
3p14.3
chr3:55,923,686-56,144,947

3E
RP11-395P16
AC130472
3p21.3
chr3:47,584,747-47,778,906


RP11-118P14
BES
3p24.1
chr3:28,585,551-28,752,970

3D
RP11-109D5
BES
3p24.2
chr3:25,497,571-25,696,055

3C
RP11-381E19
BES
3p24.3
chr3:19,684,916-19,856,368
HLA7q&12q
B-A
NLE
CH271-146d3 BES chr3:19,866,529-chr8:19,885,580 HyA inversion HLA7q
8C
RP11-908D16
BES
8p21.3
chr8:19,831,557-20,005,388
HLA7q&12q

RP11- 10C8
AC019270
8p22
chr8:13,210,538-13,365,494

8B
RP11-737E8
BES
8p23.1
chr8:11,580,455-11,789,912

8A
RP11-338B22
AC090691
8p23.3
chr8:477,644-658,409

Legend. HLA ideogram (left) showing the synteny block correspondence with the human chromosome(s) (right). Internal red numbers indicate the human corresponding chromosome. Blue and red arrows indicate concordant (blue) and inverse (red) sequence polarity (orientation) with respect to humans. Black numbers (chromosome) followed by a letter (BAC), on the right, indicate specific BACs as reported in the Supplemental Table S1.

B-H Breaks in lineages leading to HSA
B-L Breaks in lineages leading to Lar
HyA: Hylobatidae ancestor
B-A Breaks in hylobatidae ancestor
B-N Breaks in lineages leading to Nomascus
Splitting clones

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