HLA-4

HLA

HLA4

	CODE	PROBE	ACC.N	MAP	UCSC May 2004	REMARKS
	11A	RP11-412M16	AC093486	11p15.5	chr11:474,043-626,401
	11B	RP11-401C19	AC083984	11p15.5	chr11:896,316-1,008,135	HLA4p&crosshyb.
B-A						HyA translocation
	3G	RP11-320O12		3p14.2	chr3:58,624,717-58,790,934	HLA4p&5q
		RP11-380J21	AC092419	3p14.2	chr3:64,053,486-64,212,751
	3H	RP11-381G15	BES	3p12.3	chr3:75,108,760-75,285,549
B-H
	3A	RP11-183N22	AL512885	3p26.1	chr3:4,346,716-4,508,442
		RP11-586C12	BES	3p25.2	chr3:12,371,879-12,557,693
	3B	RP11-1136I4	BES	3p25.1	chr3:15,046,733-15,198,512
B-H	NLE	CH271-476O22	BES		chr3:131,017,760/chr3:15,124,069	HLA4p
B-H	NLE	CH271-120H2	BES		chr3:131,030,663/chr3:15,124,079	HLA4p
	3M	RP11-924M2	BES	3q21.3	chr3:131,126,901-131,354,303
	3L	RP11-60M4	BES	3q13.3	chr3:122,646,524-122,832,137
	3K	RP11-454H13	AC084198	3q12.3	chr3:102,798,693-103,006,891
		HSA Centromere			chr3:90,587,545-93,487,544
	3J	RP11-655A17	AC107204	3p12.1	chr3:87,099,698-87,270,490
		RP11-536K4	AC016942	3p12.3	chr3:76,682,896-76,834,909
	3I	RP11-974E1	BES	3p12.3	chr3:75,885,024-76,095,768
		CENTROMERE
B-L						HLA fusion
B-A						HyA inversion
	13D	RP11-597B2	BES	13q14.11	chr13:38,988,139-39,162,449	HLA4q&4qtel
	13C	RP11-64I8	AL158065	13q12.3	chr13:30,502,889-30,571,189
	13B	RP11-780D7	BES	13q12.3	chr13:26,335,941-26,501,574
B-N	NLE	CH271-423C2	BES		chr13:26,320,032/chr1:200,645,264	HLA4q&19p
		P11-953P22	BES	13q12.2	chr13:26,135,827-26,354,020
		RP11-194P7	BES	13q12.12	chr13:23,966,436-24,131,783
	13A	RP11-110K18	AL137119	13q11	chr13:19,404,215-19,568,080
B-A						HyA inversion
	13D	RP11-597B2	BES	13q14.11	chr13:38,988,139-39,162,449	HLA4q&4qtel
		RP11-30N18	BES	13q14.12	chr13:44,481,780-44,541,540
	13E	RP11-826G22		13q14.12	chr13:49,052,780-49,188,949
B-L						HLA inversion
	13I	RP11-691P11	BES	13q33.1	chr13:101,988,634-102,149,936	HLA4q&4qtel
		RP11-299K6	BES	13q33.1	chr13:101,837,798-102,003,007
	13H	RP11-188A23	AL354831	13q22.3	chr13:77,153,157-77,297,742
	13G	RP11-10O23	AC013618	13q21.1	chr13:54,447,776-54,623,946
	13F	RP11-153K13		13q14.2	chr13:49,505,419-49,661,239
B-L						HLA inversion
	13I	RP11-691P11	BES	13q33.1	chr13:101,988,634-102,149,936	HLA4q&4qtel
	13J	RP11-245B11	AL161774	13q34	chr13:112,670,511-112,832,864

Legend. HLA ideogram (left) showing the synteny block correspondence with the human chromosome(s) (right). Internal red numbers indicate the human corresponding chromosome. Blue and red arrows indicate concordant (blue) and inverse (red) sequence polarity (orientation) with respect to humans. Black numbers (chromosome) followed by a letter (BAC), on the right, indicate specific BACs as reported in the Supplemental Table S1.

B-H Breaks in lineages leading to HSA	B-L Breaks in lineages leading to Lar	HyA: Hylobatidae ancestor
B-A Breaks in hylobatidae ancestor	B-N Breaks in lineages leading to Nomascus	Splitting clones

home