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HLA19

CODE
PROBE
ACC.N
MAP
UCSC May 2004
REMARKS
1G
 RP11-593H24 BES 1p32.3
chr1:53,588,680-53,791,523
1H
 RP11-425H22 FPP 1p32.3
chr1:54,809,215-54,981,586
 HLA19p&19q
B-A
NLE
 CH271-464G15 BES
chr1:54,844,449-chr1:209,309,627
HyA inversion HLA19p
1U
 RP11-795M4 BES 1q32.3
chr1:209,378,477-209,574,679
 HLA19p&19q

RP11-359B18 BES 1q32.3
chr1:209,056,156-209,235,490
1T
 RP11-359E8 AC105275 1q32.3
chr1:208,018,640-208,183,379
1S
 RP11-397P13 BES 1q31.3
chr1:200,391,715-200,571,022
B-N
NLE
 CH271-423C2 BES
chr1:200,645,264-chr13:26,320,032
HLA19p&4q
B-N
NLE
 CH271-134B7 BES
chr1:200,305,408-chr13:26,359,161
 HLA19p
1R
 RP11-553K8 AL157402 1q31.3
chr1:195,215,631-195,425,961
1Q
 RP11-271G3 BES 1q31.1
chr1:186,149,942-186,150,388
1P
 RP11-453M18 BES 1q25.3
chr1:177,774,617-177,954,344
 HLA19p&7q
B-A
NLE
 CH271-208N2 BES
chr1:177,996,656-chr1:52,346,210
 HyA inversion HLA19p
1E
 RP11-978G17 BES 1p32.3
chr1:52,122,191-52,296,879
 HLA19p&7q
1F
 RP11-844G13 BES 1p32.3
chr1:53,401,173-53,597,036
B-N
NLE
 CH271-139C8 BES
chr1:67,382,014-chr.3-chr.22
 HLA19cen&crosshyb

CENTROMERE



Neocentromere
B-N
NLE
 CH271-178N15 BES
chr1:67,270,085-chr3:75,955,517
 HLA19cen&crosshyb
1J
 RP11-590K22 BES 1p31.2
chr1:67,241,465-67,417,890
 HLA19q&5qtel
1I
 RP11-110A23 BES 1p31.3
chr1:61,084,838-61,256,798
1H
 RP11-425H22 FPP 1p32.3
chr1:54,809,215-54,981,586
 HLA19q&19p
B-A
NLE
 CH271-257J11 BES
chr1:209,581,545-chr1:54,957,261
 HyA inversion HLA19q
1U
 RP11-795M4 BES 1q32.3
chr1:209,378,477-209,574,679
 HLA19q&19p

RP11-324K19 AC118468 1q41
chr1:217,525,212-217,540,761
1V
 RP11-438F14 AC098483 1q44
chr1:245,013,551-245,191,418

Legend. HLA ideogram (left) showing the synteny block correspondence with the human chromosome(s) (right). Internal red numbers indicate the human corresponding chromosome. Blue and red arrows indicate concordant (blue) and inverse (red) sequence polarity (orientation) with respect to humans. Black numbers (chromosome) followed by a letter (BAC), on the right, indicate specific BACs as reported in the Supplemental Table S1.

B-H Breaks in lineages leading to HSA
B-L Breaks in lineages leading to Lar
 HyA: Hylobatidae ancestor
B-A Breaks in hylobatidae ancestor
B-N Breaks in lineages leading to Nomascus
Splitting clones

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