HLA
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HLA5
CODE
PROBE
ACC.N
 MAP
UCSC May 2004
REMARKS
18F
 RP11-87C15 BES 18q23 chr18:75,965,206-75,965,502
18E
 RP11-153B11 BES 18q21.31 chr18:52,818,203-52,977,905
18D RP11-687E1 AC087683 18q12.3 chr18:37,767,204-37,948,244
18C
 RP11-342J19 BES 18q11.2 chr18:18,822,421-19,009,992
B-H
NLE
 CH271-171D14 BES chr18:16,870,543/chr18:183,516 HSA inversion
18A RP11-1150C18
18p11.32 chr18:151,392-295,010

RP11-752I11 BES 18q11.31 chr18:5,167,958-5,335,476
18B
 RP11-345O3 AQ543709 18q11.21 chr18:12,850,897-13,025,432

CENTROMERE



11K RP11-622O24 BES 11q11 chr11:55,139,264-55,316,087

RP11-217G11 BES 11q11 chr11:55,291,634-55,445,110

RP11-472D15 BES 11q13.1 chr11:65,021,344-65,212,337
11L RP11-638P2 BES 11q13.1 chr11:65,208,359-65,385,669
B-H




HSA inversion
11D RP11-1079D17 BES 11p15.4 chr11:3,048,710-3,220,981
11C RP11-1069L21
11p15.5 chr11:1,268,522-1,455,133
B-A




HyA translocation

3G RP11-320O12
chr.3p14.2 chr3:58,624,717-58,790,934 HLA5q&4p
B-L





HLA translocation
1N RP11-8D14 AC068728 1q23.3 chr1:157,471,001-157,634,916 HLA5q&7q

RP11-95A11 BES 1q21.3 chr1:148,858,497-149,028,367


HSA Centromere

chr1:121,147,477-123,387,476
1M RP11-35B4 AL359093 1p12 chr1:120,243,989-120,244,520 multiple signals in HSA

RP11-192J8 AFMA226WA9 1p12 chr1:118,114,733-118,315,022
1L RP11-284N8 AL365361 1p13.3 chr1:110,807,795-111,000,977
1K RP11-359C24 AC093576 1p21.3 chr1:97,529,975-97,715,435
B-A
 1J RP11-590K22 BES 1p31.2 chr1:67,241,465-67,417,890 HyA Break HLA5q&19q

Legend. HLA ideogram (left) showing the synteny block correspondence with the human chromosome(s) (right). Internal red numbers indicate the human corresponding chromosome. Blue and red arrows indicate concordant (blue) and inverse (red) sequence polarity (orientation) with respect to humans. Black numbers (chromosome) followed by a letter (BAC), on the right, indicate specific BACs as reported in the Supplemental Table S1.

B-H Breaks in lineages leading to HSA
B-L Breaks in lineages leading to Lar
 HyA: Hylobatidae ancestor
B-A Breaks in hylobatidae ancestor
B-N Breaks in lineages leading to Nomascus
Splitting clones

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