This Web site is part of the paper "The common marmoset genome provides insight into primate biology and evolution" by Kim Worley et al., appeared in Nature Genetics 46: 850-857 (2014).
Marmoset (Callithrix jacchus, CJA): synteny organization, studied by FISH
The synteny arrangement was obtained by hybridizing more than 700 human BAC clones on CJA chromosomes. The results are graphycally summarized chromosome by chromosome.
| CJA | 21 | 22 | ||||||||||||||||||||||
| HSA |
13/9/22
|
5/7
|
4
|
6
|
20/17/13
|
15/2q
|
10/1
|
7
|
12
|
15/14
|
11
|
16/10
|
8/18
|
2p
|
3
|
8
|
3
|
1
|
1
|
16
|
3/21 | 19 |
X
|
|
| HSA |
1
|
2
|
3
|
4
|
5
|
6
|
7
|
8
|
9
|
10
|
11
|
12
|
13
|
14
|
15
|
16
|
17
|
18
|
19
|
20
|
21 | 22 |
X
|
|
| CJA |
7/18/19
|
6/14
|
15/17/21
|
3
|
2
|
4
|
2/8
|
13/16
|
1
|
7/12
|
11
|
9
|
1/5
|
10
|
6/10
|
12/20
|
5
|
13
|
22
|
5
|
21 | 1 |
X
|
|
Marmoset karyotype (note: internal rearrangements not shown) CJA synteny blocks organization (summary)
Marmoset clones mapped by FISH (Excel file)
Examples. Clones with multiple signals
HSD = human segmental duplication block (from UCSC) that prevented a more detailed definition of the break. Their mapping in CJA could be misleading.