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CAE2 (this the most rearranged CAE chromosome; see the end of the page)

sequence orientation with respect to HSA centromere neocentromere sinteny breaks occurred in the vervet lineage sinteny breaks occurred in the human lineage duplicated BAC clones CAE2 is the result of complex successive inversions, not reported in the Figure above

HSA chr. clone Acc.N. UCSC Feb.2009 (hg19) map note 20f RP11-476I15 AL137028.9 chr20:62,906,096-62,965,520 20q13.33 20f RP5-1059L7 AL121913 chr20:56,232,155-56,382,378 20f RP5-906C1 AL133342 chr20:47,395,324-47,506,137r 20f RP11-257H6 BES chr20:40,066,498-40,244,105 20f CH250-27P11 chr20:35,554,047-35,741,568 macaque clone 20f RP11-1152L20 BES chr20:35,651,140-35,776,134 20q11.23 - 20b RP11-643H5 BES chr20:11,431,493-11,596,313 20p12.2 20b CH250-147I22 chr20:11,323,402-11,476,445 macaque clone 20b RP11-975D16 BES chr20:11,287,806-11,478,681 20b RP11-43J1 BES chr20:8,598,111-8,776,796 20b RP11-684P7 BES chr20:5,395,692-5,580,006 20b CH250-20N7 chr20:3,593,189-3,753,758 macaque clone 20b RP11-867B19 BES chr20:2,754,801-2,928,115 20p13 - - RP11-794O20 BES chr20:24,399,808-24,587,032 Duplications - RP11-475N20 BES chr20:24,635,369-24,808,231 - RP11-90H19 BES chr20:25,523,327-25,670,069 - - RP11-99E14 chr20:291,443-453,894 CH250-124B17 chr20:92,139-272,793 macaque clone GGO PTR HSA breakpoint 20d RP11-659L8 BES chr20:29,831,888-30,017,666 20q11.21 20d RP11-597C24 BES chr20:30,207,948-30,385,641 20d RP11-308J23 BES chr20:32,216,912-32,396,349 20d CH250-265J5 chr20:33,939,476-34,113,827 macaque clone 20d RP11-663D7 BES chr20:34,099,025-34,292,351 20q11.22 neocentromere not shared with Papionini 20c RP11-643H5 chr20:11,431,493-11,596,313 20p12.2 20c CH250-139E11 chr20:12,584,448-12,777,937 macaque clone 20c RP11-248G23 BES chr20:15,095,739-15,228,679 20c RP11-14I7 BES chr20:17,730,109-17,913,893 20c RP11-237O17 BES chr20:21,287,083-21,431,542 20c RP11-627C15 BES chr20:24,208,343-24,399,802 20p11.21 - RP11-794O20 BES chr20:24,399,808-24,587,032 Duplications - RP11-475N20 BES chr20:24,635,369-24,808,231 - RP11-90H19 BES chr20:25,523,327-25,670,069 - 20a RP11-867B19 BES chr20:2,754,801-2,928,115 20p13 20a CH250-212J18 chr20:2,567,309-2,738,373 macaque clone 20a RP11-262I12 BES chr20:1,504,631-1,681,464 20a RP11-43K22 BES chr20:1,197,645-1,370,481 duplicated on 2q 20a CH250-141G14 chr20:498,598-662,151 macaque clone 20a RP11-99E14 BES chr20:291,443-453,894 20p13 - 20e RP11-663D7 BES chr20:34,099,025-34,292,351 20q11.22 20e CH250-147C22 chr20:34,194,864-34,360,907 macaque clone 20e RP11-381P2 BES chr20:34,292,423-34,452,273 duplicated on 2q 20e RP11-115H6 BES chr20:34,673,620-34,872,526 20e CH250-160J22 chr20:35,418,191-35,593,431 macaque clone 20e RP11-1152L20 BES chr20:35,651,140-35,776,134 20q11.23 - 21a RP11-468N22 BES chr21:35,738,487-35,926,512 21q22.12 21a CH250-204O04 chr21:35,375,423-35,568,778 macaque clone 21a RP11-124K12 BES chr21:24,834,561-24,978,580 21a RP11-300M18 BES chr21:18,875,076-19,039,028 21a RP11-138O15 BES chr21:15,627,586-15,772,076 21q11.2 - 21b RP11-468N22 BES chr21:35,738,487-35,926,512 21q22.12 21b CH250-53F5 chr21:35,734,349-35,899,885 macaque clone 21b RP11-476D17 BES chr21:39,682,968-39,863,671 21b RP11-162F19 BES chr21:46,532,032-46,691,772 21q22.3

Co-hybridization of macaque BAC clones on human (HSA), macaque (MMU) and vervet (CAE) metaphases. Each couple of probes (red and green) recognize a specific breakpoint in the Chlorocebus chromosome 2

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