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Immunoglobulin gene IgL (22q11.23) in normal cells Atlas IgL |
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| IgL at UCSC | ||
| Primers (5' -> 3') |
Clone |
Comment |
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dJ1019H10 | see below |
| dJ869I1 | very faint crosshybridization at 9q22 | |
Ends of dJ1019H10:
AZ757845
TTCAACAATTGTAGGAATCATTTCAGTAAACCAAACACAAGAGCCTCAAC
TATAACTACAAGTCCTCCAGGAGAGGAGAACGCTGTCTCAGAGGGTGCAT
TCCTACTGGAATTTCTCTTCTCTTTGGGACAAACCAGCCCAGAGGAGGCA
CAGGGGCTGTGTGTCATCTGGTTTCCTAGATGAGGTGTCTCCTCCTCACT
GTCCTGAGATTTTGAAGAAACTGGGGAGATTGGTGCAGACACTCCTTGGA
TCCTTACAGGAAACTTCCTTCAGACCACACACTCCTCAATTTGTTCCCAA
GCTCCAAAGTTTCTAAAGTCACTGTCTAAAGGGCCCACAGTGTTTTTGTG
GAGTGGTGGAAAAGCTCTGGGGATGGAAGNGGGGGGGGGGTGCAAACATT
CTGAATGTCCTACTGGTGCTGATGCNACTTCAAT
AZ757844:
AGGATCCCTATTCCACTAGGTGGCACAGTGGACCTTGAAAGGCCATATACTGTCCAGACCAAGGGCAGAG
TGACTTTGACATGCCATGTGCTCTCCAGACCAAGGGCAGAGAGAGACCTGGAAATGCCATGTGCTCTCCA
GACCAAGGGCAGAGAGAGATGCTCACTGTGTGTGGGGGGACCCTCTGTTCATAGAAAATCACAGAGTTGC
CTTCCCTTGAGCTATATCCCTGGTTAGTACGACATTCCCTGATCTTGTCAAACATGATTACTTCCCTGAA
CTGTAAAACTTTCCACACACTGAGCACACAGAGAGGATAGAGACATAGCGACTATAGATAGGAAAAGGAG
GAAAATTCTGCAACAAGATAGCTTGCGGATCCTTTCTAACACCCAGATGGGCTGTCAGAAGCTGGGTTAG
TCCAGAACCTTTGAATACACCAGGGTGTGCCCTGGNTGGAACTTTAGTGNTCCAGG
(do not contain single copy sequences)
BlastN of AZ757845:
>D87024 (
Plus Strand HSPs:
Query: 1 TTCAACAATTGTAGGAATCATTTCAGTAAACCAAACACAAGAGCCTCAACTATAACTACA
60
TTCAACAATTGTAGGAATCATTTCAGTAAACCAAACACAAGAGCCTCAACTATAACTACA
Sbjct: 20247 TTCAACAATTGTAGGAATCATTTCAGTAAACCAAACACAAGAGCCTCAACTATAACTACA
20306
Query: 61 AGTCCTCCAGGAGAGGAGAACGCTGTCTCAGAGGGTGCATTCCTACTGGAATTTCTCTTC
120
AGTCCTCCAGGAGAGGAGAACGCTGTCTCAGAGGGTGCATTCCTACTGGAATTTCTCTTC
Sbjct: 20307 AGTCCTCCAGGAGAGGAGAACGCTGTCTCAGAGGGTGCATTCCTACTGGAATTTCTCTTC
20366
Query: 121 TCTTTGGGACAAACCAGCCCAGAGGAGGCACAGGGGCTGTGTGTCATCTGGTTTCCTAGA
180
TCTTTGGGACAAACCAGCCCAGAGGAGGCACAGGGGCTGTGTGTCATCTGGTTTCCTAGA
Sbjct: 20367 TCTTTGGGACAAACCAGCCCAGAGGAGGCACAGGGGCTGTGTGTCATCTGGTTTCCTAGA
20426
Query: 181 TGAGGTGTCTCCTCCTCACTGTCCTGAGATTTTGAAGAAACTGGGGAGATTGGTGCAGAC
240
TGAGGTGTCTCCTCCTCACTGTCCTGAGATTTTGAAGAAACTGGGGAGATTGGTGCAGAC
Sbjct: 20427 TGAGGTGTCTCCTCCTCACTGTCCTGAGATTTTGAAGAAACTGGGGAGATTGGTGCAGAC
20486
Query: 241 ACTCCTTGGATCCTTACAGGAAACTTCCTTCAGACCACACACTCCTCAATTTGTTCCCAA
300
ACTCCTTGGATCCTTACAGGAAACTTCCTTCAGACCACACACTCCTCAATTTGTTCCCAA
Sbjct: 20487 ACTCCTTGGATCCTTACAGGAAACTTCCTTCAGACCACACACTCCTCAATTTGTTCCCAA
20546
Query: 301 GCTCCAAAGTTTCTAAAGTCACTGTCTAAAGGGCCCACAGTGTTTTTGTGGAGTGGTGGA
360
GCTCCAAAGTTTCTAAAGTCACTGTCTAAAGGGCCCACAGTGTTTTTGTGGAGTGGTGGA
Sbjct: 20547 GCTCCAAAGTTTCTAAAGTCACTGTCTAAAGGGCCCACAGTGTTTTTGTGGAGTGGTGGA
20606
Query: 361 AAAGCTCTGGGGATGGAAGNGGGGGGGGGGTGCAAA-CATTCTGAATGTCCT-ACTGGTG
418
AAAGCTCTGGGGATGGAA--GG-GG-GG--TGCAAA-CATTCTGAATGT-CT-ACTG
TG
Sbjct: 20607 AAAGCTCTGGGGATGGAAAGTGGTGGTGGTTGCAAAGCATTCTGAATGTACTTACTGTTG
20666
Query: 419 CTGA-TGCN-ACTT-CAA
433
CTGA-TGC--ACTT-CAA
Sbjct: 20667 CTGAATGCACACTTACAA 20684
Conclusions: the dJ1019H10 extends towards sequences telomeric to D87024.
Ends of dJ869I1:
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