To facilitate the positioning of the clone on the chr. 22 sequence, the ends have been sequences and Blast search performed.

bC72M14 - SP6 end

ACCATGATTACGCCAAGCTATTTAGGTGACACTATAGAATACTCAAGCTT
GCATGCCTGCAGGTCGACTCTAGAGGATCCCATTTTTACCTCAAATATTG
ATTTTGGCTCTCAGGTCCCCTCAAGCAACTATGTCAGTGATTTTTTTCCA
TACCTAAGTGTACAGGAAAAAAGAAACAAAGGAAGTAGAAAACACAAAAA
TCCCTGTGGACTTCCAAAAGCCAAAGTTTACACCCCCTGCAATATTGCCA
TCTGCTACTGGTTTCTTTCTGACCCAGTCAGACAAAAGAGGCCCCTAACT
GTATCCAAGCCAGTTAATTATCAGATACAATCCAATTGTAGACTCAGTTC
AGTTTCTGTCAGAACTTCCAAACCCAGTGTTGATCAAAAATTTGCTCAAA
CAAACTCAGAGACTCAATCTCTGAGCAAATCTGTGGAGCCTACATCTGAG
GAGAACTTACCAAGATCCCAGTGCTGTT

MASKED

ACCATGATTACGCCAAGCTATTTAGGTGACACTATAGAATACTCAAGCTT
GCATGCCTGCAGGTCGACTCTAGNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNAGTGCTGTT

Blast search results:

>gb|AC000029.17|AC000029 Homo sapiens Chromosome 22q11.2 BAC Clone bK865e9 In GNAZ-BCR Region,
complete sequence Length = 142,979 bp

......

Query: 71 TAGAGGATCCCATTTTTACCTCAAATATTGATTTTGGCTCTCAGGTCCCCTCAAGCAACT 130
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 26064 TAAAGGATCCCATTTTTACCTCAAATATTGACTTTGGCTCTCAGGTCCCCTCAAGCAACT 26123

Query: 131 ATGTCAGTGATTTTTTTCCATACCTAAGTGTACAGGAAAAAAGAAACAAAGGAAGTAGAA 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26124 ATGTCAGTGATTTTTTTCCATACCTAAGTGTACAGGAAAAAAGAAACAAAGGAAGTAGAA 26183

Query: 191 AACACAAAAATCCCTGTGGACTTCCAAAAGCCAAAGTTTACACCCCCTGCAATATTGCCA 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26184 AACACAAAAATCCCTGTGGACTTCCAAAAGCCAAAGTTTACACCCCCTGCAATATTGCCA 26243

Query: 251 TCTGCTACTGGTTTCTTTCTGACCCAGTCAGACAAAAGAGGCCCCTAACTGTATCCAAGC 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26244 TCTGCTACTGGTTTCTTTCTGACCCAGTCAGACAAAAGAGGCCCCTAACTGTATCCAAGC 26303

Query: 311 CAGTTAATTATCAGATACAATCCAATTGTAGACTCAGTTCAGTTTCTGTCAGAACTTCCA 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26304 CAGTTAATTATCAGATACAATCCAATTGTAGACTCAGTTCAGTTTCTGTCAGAACTTCCA 26363

Query: 371 AACCCAGTGTTGATCAAAAATTTGCTCAAACAAACTCAGAGA-CTCAA-TCTCTGAGCAA 428
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 26364 AACCCAGTGTTGATCAAAAATTTGCTCAAACAAACTCAGAGAACTCAAATCTCTGAGCAA 26423

Query: 429 ATCTGTGGAGCCT-ACA-TCTGAGG-AGAACTTACCAAGATCCC-AGT-GCTGT 477
||||||||||||| ||| ||||||| |||||||||||||||||| |||||||||
Sbjct: 26424 ATCTGTGGAGCCTCACAATCTGAGGGAGAACTTACCAAGATCCCCAGTTGCTGT 26477

 

 


bC72M14 - T7 end

>gb|U07000.1|HSU07000 Human breakpoint cluster region (BCR) gene, complete cds
          Length = 152141

 Score = 44.1 bits (22), Expect = 8e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 4     atgctggtcaggtaaagggtgg 25
             ||||||||||||||||||||||
Sbjct: 66639 atgctggtcaggtaaagggtgg 66618