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Most of the clones belong to the BAC or PAC libraries produced by P. de Jong (BAC/PAC libraries).
Codes: sometimes the prefix used for BACs and PACs (dJ..., bA...) is the one used at the Sanger Centre: see specific page.
m.s. = multiple site (two or more sites detected by the
clone).
The position of the clones on the human sequence is derived from the UCSC database. Generation of smaller probes using long-PCR. Oligos from the sequence of a specific region can
be designed to amplify DNA stretches of appropriate length by
long-PCR experiments suitable for FISH experiments multiple. The
use of repeat-masked sequences can help in avoiding long repeats
that would poorly contributed to the FISH signal. The efficiency
and specificity of PCR amplification can be improved by using
the appropriate BAC/PAC probe as template, in alternative to the
total human DNA. Relatively small long-PCR products (few kb) can
be pooled for this purpose. In our hands cloned PCR products are
more efficient in FISH experiments than amplified products.
We send our reagents in this form: PAC, BAC, YAC library information (resistance...) NOTE: we are moving the link sto the UCSC (University California Santa ruz)
BAC / PAC / YAC / plasmids
stab (bacteria
containing the probe, in agar). To be quick, we just prepare
the stab and put it on the mail. You may need to keep it at 37C
for some hours. In addition, you are supposed to grow
the bacteria, extract, label DNA etc.
to be stored in the refrigerator (not in the
freezer), or at room temperature.
PCP and WCP (somatic cell hybrids)
DNA; to be amplified
by Alu-PCR
to be stored in the refrigerator
WCP (flow-sorted chromosomes)
DOP-amplified products;
to be amplified again with DOP-PCR
to be stored in the refrigerator