PhD School program in
Evolutionary and Environmental Sciences

Pubblicazioni su riviste ISI dei Dottorandi
Pubblications in ISI journals by PhD Students (Cycle XXIV-XXVII)

Capozzi O, Carbone L, Stanyon RR, Marra A, Yang F, Whelan CW, de Jong PJ, Rocchi M, Archidiacono N: A comprehensive molecular cytogenetic analysis of chromosome rearrangements in gibbons. Genome Res (2012)

D’Onghia G, Giove A, Maiorano P, Carlucci R, Minerva M, Capezzuto F, Sion L, Tursi A: Exploring Relationships between Demersal Resources and Environmental Factors in the Ionian Sea (Central Mediterranean). Journal of Marine Biology 2012:1-12 (2012)

Mairota P, Cafarelli B, Boccaccio L, Leronni V, Labadessa R, Kosmidou V, Nagendra H: Using landscape structure to develop quantitative baselines for protected area monitoring. Ecological Indicators (2012)

Carbone L, Harris RA, Mootnick AR, Milosavljevic A, Martin DI, Rocchi M, Capozzi O, Archidiacono N, Konkel MK, Walker JA, Batzer MA, de Jong PJ: Centromere remodeling in Hoolock leuconedys (Hylobatidae) by a new transposable element unique to the gibbons. Genome Biol Evol (2012)

Guastadisegni MC, Roberto R, L'Abbate A, Palumbo O, Carella M, Giordani L, Cecinati V, Giordano P, Storlazzi CT: Thrombocytopenia-absent-radius syndrome in a child showing a larger 1q21.1 deletion than the one in his healthy mother, and a significant downregulation of the commonly deleted genes. Eur J Med Genet 55:120-3 (2012)

Liquori GE, Mastrodonato M, Mentino D, Scillitani G, Desantis S, Portincasa P, Ferri D: In situ characterization of O-linked glycans of Muc2 in mouse colon. Acta Histochem 114:723-32 (2012)

Macchia G, Trombetta D, Moller E, Mertens F, Storlazzi CT, Debiec-Rychter M, Sciot R, Nord KH: FOSL1 as a candidate target gene for 11q12 rearrangements in desmoplastic fibroblastoma. Lab Invest 92:735-43 (2012)

Mastrodonato M, Portincasa P, Mentino D, Rossi R, Resta L, Ferri D, Liquori GE: Caveolin-1 and mitochondrial alterations in regenerating rat liver. Microsc Res Tech 75:1026-32 (2012)

Palumbo O, Palumbo P, Palladino T, Stallone R, Zelante L, Carella M: A novel deletion in 2q24.1q24.2 in a girl with mental retardation and generalized hypotonia: a case report. Mol Cytogenet 5:1 (2012)

Prüfer K, Munch K, Hellmann I, Akagi K, Miller JR, Walenz B, Koren S, Sutton G, Kodira C, Winer R, Knight JR, Mullikin JC, Meader SJ, Ponting CP, Lunter G, Higashino S, Hobolth A, Dutheil J, Karakoç E, Alkan C, Sajjadian S, Catacchio CR, Ventura M, Marques-Bonet T, Eichler EE, André C, Atencia R, Mugisha L, Junhold J, Patterson N, Siebauer M, Good JM, Fischer A, Ptak SE, Lachmann M, Symer DE, Mailund T, Schierup MH, Andrés AM, Kelso J, Pääbo S: The bonobo genome compared with the chimpanzee and human genomes. Nature 486:527-531 (2012)

Rocchi M, Archidiacono N, Schempp W, Capozzi O, Stanyon R: Centromere repositioning in mammals. Heredity 108:59-67 (2012)

Scillitani G, Mentino D, Liquori GE, Ferri D: Histochemical characterization of the mucins of the alimentary tract of the grass snake, Natrix natrix (Colubridae). Tissue Cell 44:288-95 (2012)

Trombetta D, Macchia G, Mandahl N, Nord KH, Mertens F: Molecular genetic characterization of the 11q13 breakpoint in a desmoplastic fibroma of bone. Cancer Genet 205:410-3 (2012)

Uboldi S, Bernasconi S, Romano M, Marchini S, Fuso Nerini I, Damia G, Ganzinelli M, Marangon E, Sala F, Clivio L, Chiorino G, Digiandomenico S, Rocchi M, Capozzi O, Margison G, Watson A, Caccuri A, Pastore A, Fossati A, Mantovani R, Grosso F, Tercero J, Erba E, D'Incalci M: Characterization of a new trabectedin resistant myxoid liposarcoma cell line that shows collateral sensitivity to methylating agents. Int J Cancer 131:59-69 (2012)

Rossi D, Fangazio M, Rasi S, Vaisitti T, Monti S, Cresta S, Chiaretti S, Del Giudice I, Fabbri G, Bruscaggin A, Spina V, Deambrogi C, Marinelli M, Fama R, Greco M, Daniele G, Forconi F, Gattei V, Bertoni F, Deaglio S, Pasqualucci L, Guarini A, Dalla-Favera R, Foa R, Gaidano G: Disruption of BIRC3 associates with fludarabine chemorefractoriness in TP53 wild-type chronic lymphocytic leukemia. Blood 119:2854-62 (2012a)

Rossi D, Trifonov V, Fangazio M, Bruscaggin A, Rasi S, Spina V, Monti S, Vaisitti T, Arruga F, Fama R, Ciardullo C, Greco M, Cresta S, Piranda D, Holmes A, Fabbri G, Messina M, Rinaldi A, Wang J, Agostinelli C, Piccaluga PP, Lucioni M, Tabbo F, Serra R, Franceschetti S, Deambrogi C, Daniele G, Gattei V, Marasca R, Facchetti F, Arcaini L, Inghirami G, Bertoni F, Pileri SA, Deaglio S, Foa R, Dalla-Favera R, Pasqualucci L, Rabadan R, Gaidano G: The coding genome of splenic marginal zone lymphoma: activation of NOTCH2 and other pathways regulating marginal zone development. J Exp Med 209:1537-51 (2012b)

Mandahl N, Bartuma H, Magnusson L, Isaksson M, Macchia G, Mertens F: HMGA2 and MDM2 expression in lipomatous tumors with partial, low-level amplification of sequences from the long arm of chromosome 12. Cancer Genet 204:550-6 (2011)

Partipilo G, D'Addabbo P, Lacalandra GM, Liu GE, Rocchi M: Refinement of Bos taurus sequence assembly based on BAC-FISH experiments. BMC Genomics 12:639 (2011)

Gramegna P, Latronico T, Brana MT, Di Bari G, Mengoni F, Belvisi V, Mascellino MT, Lichtner M, Vullo V, Mastroianni CM, Liuzzi GM: In vitro downregulation of matrix metalloproteinase-9 in rat glial cells by CCR5 antagonist maraviroc: therapeutic implication for HIV brain infection. PLoS One 6:e28499 (2011)

Bartuma H, Nord KH, Macchia G, Isaksson M, Nilsson J, Domanski HA, Mandahl N, Mertens F: Gene expression and single nucleotide polymorphism array analyses of spindle cell lipomas and conventional lipomas with 13q14 deletion. Genes, Chromosomes and Cancer 50:619-632 (2011)

Filioli Uranio M, Valentini L, Lange-Consiglio A, Caira M, Guaricci AC, L'Abbate A, Catacchio CR, Ventura M, Cremonesi F, Dell'Aquila ME: Isolation, proliferation, cytogenetic, and molecular characterization and in vitro differentiation potency of canine stem cells from foetal adnexa: a comparative study of amniotic fluid, amnion, and umbilical cord matrix. Mol Reprod Dev 78:361-73 (2011)

Micale L, Augello B, Daniele G, Macchia G, L'Abbate A, Muehlematter D, Vandenberghe P, Johansson B, Cabrol C, Sole F, Dastugue N, Slovak ML, Lillington D, Raynaud S, Lafage M, Nacheva ED, Merla G, Storlazzi CT: Amplification of the G allele at SNP rs6983267 in 8q24 amplicons in myeloid malignancies as cause of the lack of MYC overexpression? Blood Cells Mol Dis 47:259-61 (2011)

Ventura M, Catacchio C, Sajjadian S, Vives L, Sudmant P, Marques-Bonet T, Graves TA, Wilson RK, Eichler EE: The evolution of African great ape subtelomeric heterochromatin and the fusion of human chromosome 2. Genome Res 21:1640-9 (2011)

Ventura M, Catacchio CR, Alkan C, Marques-Bonet T, Sajjadian S, Graves TA, Hormozdiari F, Navarro A, Malig M, Baker C, Lee C, Turner EH, Chen L, Kidd JM, Archidiacono N, Shendure J, Wilson RK, Eichler EE: Gorilla genome structural variation reveals evolutionary parallelisms with chimpanzee. Genome Res 21:1640-9 (2011)

Uboldi S, Bernasconi S, Romano M, Marchini S, Fuso Nerini I, Damia G, Ganzinelli M, Marangon E, Sala F, Clivio L, Chiorino G, Digiandomenico S, Rocchi M, Capozzi O, Margison G, Watson A, Caccuri A, Pastore A, Fossati A, Mantovani R, Grosso F, Tercero J, Erba E, D'Incalci M: Characterization of a new trabectedin resistant myxoid liposarcoma cell line that shows collateral sensitivity to methylating agents. Int J Cancer (2011)

Stanyon R, Garofalo F, Steinberg ER, Capozzi O, Di Marco S, Nieves M, Archidiacono N, Mudry MD: Chromosome painting in two genera of South American monkeys: species Identification, conservation, and management. Cytogenet Genome Res 134:40-50 (2011)

Rocchi M, Archidiacono N, Schempp W, Capozzi O, Stanyon R: Centromere repositioning in mammals. Heredity 108:59-67 (2011)

Locke DP, Hillier LW, Warren WC, Worley KC, Nazareth LV, Muzny DM, Yang SP, Wang Z, Chinwalla AT, Minx P, Mitreva M, Cook L, Delehaunty KD, Fronick C, Schmidt H, Fulton LA, Fulton RS, Nelson JO, Magrini V, Pohl C, Graves TA, Markovic C, Cree A, Dinh HH, Hume J, Kovar CL, Fowler GR, Lunter G, Meader S, Heger A, Ponting CP, Marques-Bonet T, Alkan C, Chen L, Cheng Z, Kidd JM, Eichler EE, White S, Searle S, Vilella AJ, Chen Y, Flicek P, Ma J, Raney B, Suh B, Burhans R, Herrero J, Haussler D, Faria R, Fernando O, Darre F, Farre D, Gazave E, Oliva M, Navarro A, Roberto R, Capozzi O, Archidiacono N, Valle GD, Purgato S, Rocchi M, Konkel MK, Walker JA, Ullmer B, Batzer MA, Smit AF, Hubley R, Casola C, Schrider DR, Hahn MW, Quesada V, Puente XS, Ordonez GR, Lopez-Otin C, Vinar T, Brejova B, Ratan A, Harris RS, Miller W, Kosiol C, Lawson HA, Taliwal V, Martins AL, Siepel A, Roychoudhury A, Ma X, Degenhardt J, Bustamante CD, Gutenkunst RN, Mailund T, Dutheil JY, Hobolth A, Schierup MH, Ryder OA, Yoshinaga Y, de Jong PJ, Weinstock GM, Rogers J, Mardis ER, Gibbs RA, Wilson RK: Comparative and demographic analysis of orang-utan genomes. Nature 469:529-33 (2011)

Giannuzzi G, D'Addabbo P, Gasparro M, Martinelli M, Carelli FN, Antonacci D, Ventura M: Analysis of high-identity segmental duplications in the grapevine genome. BMC genomics 12:436 (2011)

Alkan C, Cardone MF, Catacchio CR, Antonacci F, O'Brien SJ, Ryder OA, Purgato S, Zoli M, Della Valle G, Eichler EE, Ventura M: Genome-wide characterization of centromeric satellites from multiple mammalian genomes. Genome Res 21:137-45 (2011)

Albano F, Anelli L, Zagaria A, Coccaro N, Casieri P, Rossi AR, Vicari L, Liso V, Rocchi M, Specchia G: Non random distribution of genomic features in breakpoint regions involved in chronic myeloid leukemia cases with variant t(9;22) or additional chromosomal rearrangements. Mol Cancer 9:120 (2010a)

Albano F, Anelli L, Zagaria A, Coccaro N, D'Addabbo P, Liso V, Rocchi M, Specchia G: Genomic segmental duplications on the basis of the t(9;22) rearrangement in chronic myeloid leukemia. Oncogene 29:2509-2516 (2010b)

Antonacci F, Kidd JM, Marques-Bonet T, Teague B, Ventura M, Girirajan S, Alkan C, Campbell CD, Vives L, Malig M, Rosenfeld JA, Ballif BC, Shaffer LG, Graves TA, Wilson RK, Schwartz DC, Eichler EE: A large and complex structural polymorphism at 16p12.1 underlies microdeletion disease risk. Nat Genet 42:745-750 (2010)

Aschero S, Vallero S, Morra I, Impera L, Forni M, Sandri A, Basso ME, Storlazzi CT, Giordano F, Fidani P, De Ioris MA, di Montezemolo LC: A complex karyotype including a t(2;11) in a paediatric ependymoma: case report and review of the literature. J Neurooncol 99:141-146 (2010)

D'Alessandro V, Muscarella LA, la Torre A, Bisceglia M, Parrella P, Scaramuzzi G, Storlazzi CT, Trombetta D, Kok K, De Cata A, Sperandeo M, Zelante L, Carella M, Vendemiale G: Molecular analysis of the HuD gene in neuroendocrine lung cancers. Lung Cancer 67:69-75 (2010)

Guastadisegni MC, Lonoce A, Impera L, Di Terlizzi F, Fugazza G, Aliano S, Grasso R, Cluzeau T, Raynaud S, Rocchi M, Storlazzi CT: CBFA2T2 and C20orf112: two novel fusion partners of RUNX1 in acute myeloid leukemia. Leukemia 24:1516-9 (2010)

Kidd JM, Sampas N, Antonacci F, Graves T, Fulton R, Hayden HS, Alkan C, Malig M, Ventura M, Giannuzzi G, Kallicki J, Anderson P, Tsalenko A, Yamada NA, Tsang P, Kaul R, Wilson RK, Bruhn L, Eichler EE: Characterization of missing human genome sequences and copy-number polymorphic insertions. Nat Methods 7:365-71 (2010)

Liu GE, Ventura M, Cellamare A, Chen L, Cheng Z, Zhu B, Li C, Song J, Eichler EE: Analysis of recent segmental duplications in the bovine genome. BMC Genomics 10:571 (2010)

Minervini CF, Ruggieri S, Traversa M, D'Aiuto L, Marsano RM, Leronni D, Centomani I, De Giovanni C, Viggiano L: Evidences for insulator activity of the 5'UTR of the Drosophila melanogaster LTR-retrotransposon ZAM. Mol Genet Genomics 283:503-9 (2010)

Porcelli D, Oliva M, Duchi S, Latorre D, Cavaliere V, Barsanti P, Villani G, Gargiulo G, Caggese C: Genetic, Functional and Evolutionary Characterization of scox, the Drosophila melanogaster Ortholog of the Human SCO1 Gene. Mitochondrion (2010)

Storlazzi CT, Lonoce A, Guastadisegni MC, Trombetta D, D'Addabbo P, Daniele G, L'Abbate A, Macchia G, Surace C, Kok K, Ullmann R, Purgato S, Palumbo O, Carella M, Ambros PF, Rocchi M: Gene amplification as double minutes or homogeneously staining regions in solid tumors: Origin and structure. Genome Res 20:1198-1206 (2010)

Carbone L, D'Addabbo P, Cardone MF, Teti MG, Misceo D, Vessere GM, de Jong PJ, Rocchi M: A satellite-like sequence, representing a "clone gap" in the human genome, was likely involved in the seeding of a novel centromere in macaque. Chromosoma 118:269-277 (2009)

Cellamare A, Catacchio CR, Alkan C, Giannuzzi G, Antonacci F, Cardone MF, Della Valle G, Malig M, Rocchi M, Eichler EE, Ventura M: New insights into centromere organization and evolution from the white-cheeked gibbon and marmoset. Mol Biol Evol 26:1889-900 (2009)

Chlamydas S, Heun P, Dimitri P, Moschetti R, Barsanti P, Caizzi R: The paracentric inversion In(2Rh)PL alters the centromeric organization of chromosome 2 in Drosophila melanogaster. Chromosome Res 17:1-9 (2009)

Iacobucci I, Storlazzi CT, Cilloni D, Lonetti A, Ottaviani E, Soverini S, Astolfi A, Chiaretti S, Vitale A, Messa F, Impera L, Baldazzi C, D'Addabbo P, Papayannidis C, Lonoce A, Colarossi S, Vignetti M, Piccaluga PP, Paolini S, Russo D, Pane F, Saglio G, Baccarani M, Foa R, Martinelli G: Identification and molecular characterization of recurrent genomic deletions on 7p12 in the IKZF1 gene in a large cohort of BCR-ABL1-positive acute lymphoblastic leukemia patients: on behalf of Gruppo Italiano Malattie Ematologiche dell'Adulto Acute Leukemia Working Party (GIMEMA AL WP). Blood 114:2159-67 (2009)

Krstic AD, Impera L, Guc-Scekic M, Lakic N, Djokic D, Slavkovic B, Storlazzi CT: A complex rearrangement involving cryptic deletion of ETV6 and CDKN1B genes in a case of childhood acute lymphoblastic leukemia. Cancer Genet Cytogenet 195:125-31 (2009)

Micale L, Muscarella LA, Marzulli M, Augello B, Tritto P, D'Agruma L, Zelante L, Palumbo G, Merla G: VHL frameshift mutation as target of nonsense-mediated mRNA decay in Drosophila melanogaster and human HEK293 cell line. J Biomed Biotechnol 2009:860761 (2009)

Pugliese N, Maimone F, Scrascia M, Materu SF, Pazzani C: SXT-related integrating conjugative element and IncC plasmids in Vibrio cholerae O1 strains in Eastern Africa. J Antimicrob Chemother 63:438-42 (2009)

Scrascia M, Pugliese N, Maimone F, Mohamud KA, Ali IA, Grimont PA, Pazzani C: Cholera in Ethiopia in the 1990 s: epidemiologic patterns, clonal analysis, and antimicrobial resistance. Int J Med Microbiol 299:367-372 (2009a)

Scrascia M, Pugliese N, Maimone F, Mohamud KA, Grimont PA, Materu SF, Pazzani C: Clonal relationship among Vibrio cholerae O1 El Tor strains isolated in Somalia. Int J Med Microbiol 299:203-207 (2009b)

Trombetta D, Mertens F, Lonoce A, D'Addabbo P, Rennstam K, Mandahl N, Storlazzi CT: Characterization of a hotspot region on chromosome 12 for amplification in ring chromosomes in atypical lipomatous tumors. Genes Chromosomes Cancer 48:993-1001 (2009)

Albano F, Zagaria A, Anelli L, Pannunzio A, Manodoro F, Coccaro N, Russo Rossi A, Liso V, Rocchi M, Specchia G: The double deceit generated by an insertion mechanism in chronic myeloid leukemia with t(9;9;22). Ann Hematol 87:923-6 (2008)

Caratozzolo M, Carnazza S, Fortuna L, Frasca M, Guglielmino S, Gurrieri G, Marletta G: Self-organizing models of bacterial aggregation states. Math Biosci Eng 5:75-83 (2008)

De Grassi A, Lanave C, Saccone C: Genome duplication and gene-family evolution: the case of three OXPHOS gene families. Gene 421:1-6 (2008)

Guastadisegni MC, Lonoce A, Impera L, Albano F, D'Addabbo P, Caruso S, Vasta I, Panagopoulos I, Leszl A, Basso G, Rocchi M, Storlazzi CT: Bone marrow ectopic expression of a non-coding RNA in childhood T-cell acute lymphoblastic leukemia with a novel t(2;11)(q11.2;p15.1) translocation. Mol Cancer 7:80 (2008)

Impera L, Albano F, Lo Cunsolo C, Funes S, Iuzzolino P, Laveder F, Panagopoulos I, Rocchi M, Storlazzi CT: A novel fusion 5'AFF3/3'BCL2 originated from a t(2;18)(q11.2;q21.33) translocation in follicular lymphoma. Oncogene 27:6187-6190 (2008a)

Impera L, Albano F, Mancini M, Aventin A, Rocchi M, Storlazzi CT: Similar mechanisms formed ring markers containing chromosome 12 pericentromeric region in two patients with therapy-related acute myeloid leukemia. Cancer Genet Cytogenet 181:131-137 (2008b)

Lomiento M, Jiang Z, D'Addabbo P, Eichler EE, Rocchi M: Evolutionary-new centromeres preferentially emerge within gene deserts. Genome Biol 9:R173 (2008)

Moschetti R, Chlamydas S, Massimiliano Marsano R, Caizzi R: Conserved motifs and dynamic aspects of the terminal inverted repeat organization within Bari-like transposons. Mol Genet Genomics 279:451-461 (2008)

Silva FP, Morolli B, Storlazzi CT, Zagaria A, Impera L, Klein B, Vrieling H, Kluin-Nelemans HC, Giphart-Gassler M: ETV6 mutations and loss in AML-M0. Leukemia 22:1639-1643 (2008)

Stanyon R, Rocchi M, Capozzi O, Roberto R, Misceo D, Ventura M, Cardone M, Bigoni F, Archidiacono N: Primate chromosome evolution: ancestral karyotypes, marker order and neocentromeres. Chromosome Res 16:17-39 (2008)

Storlazzi CT, Albano F, Guastadisegni MC, Impera L, Muhlematter D, Meyer-Monard S, Wuillemin W, Rocchi M, Jotterand M: Upregulation of MEL1 and FLJ42875 genes by position effect resulting from a t(1;2)(p36;p21) occurring during evolution of chronic myelomonocytic leukemia. Blood Cells Mol Dis 40:452-455 (2008)

Surace C, Pedeutour F, Trombetta D, Burel-Vandenbos F, Rocchi M, Storlazzi CT: Episomal amplification of MYCN in a case of medulloblastoma. Virchows Arch 452:491-497 (2008)

Ventura M, Antonacci F, Cardone MF, Stanyon R, D'Addabbo P, Cellamare A, Sprague LJ, Eichler EE, Archidiacono N, Rocchi M: Evolutionary formation of new centromeres in macaque. Science 316:243-246 (2007)

Stranger BE, Forrest MS, Dunning M, Ingle CE, Beazley C, Thorne N, Redon R, Bird CP, de Grassi A, Lee C, Tyler-Smith C, Carter N, Scherer SW, Tavare S, Deloukas P, Hurles ME, Dermitzakis ET: Relative impact of nucleotide and copy number variation on gene expression phenotypes. Science 315:848-53 (2007)

Storlazzi CT, Albano F, Lo Cunsolo C, Doglioni C, Guastadisegni MC, Impera L, Lonoce A, Funes S, Macri E, Iuzzolino P, Panagopoulos I, Specchia G, Rocchi M: Upregulation of the SOX5 by promoter swapping with the P2RY8 gene in primary splenic follicular lymphoma. Leukemia 17:2221-2225 (2007)

Sbisa E, Catalano D, Grillo G, Licciulli F, Turi A, Liuni S, Pesole G, De Grassi A, Caratozzolo MF, D'Erchia AM, Navarro B, Tullo A, Saccone C, Gisel A: p53FamTaG: a database resource of human p53, p63 and p73 direct target genes combining in silico prediction and microarray data. BMC Bioinformatics 8 Suppl 1:S20 (2007)

Roberto R, Capozzi O, Wilson RK, Mardis ER, Lomiento M, Tuzun E, Cheng Z, Mootnick AR, Archidiacono N, Rocchi M, Eichler EE: Molecular refinement of gibbon genome rearrangement. Genome Res 17:249-257 (2007)

Porcelli D, Barsanti P, Pesole G, Caggese C: The nuclear OXPHOS genes in insecta: a common evolutionary origin, a common cis-regulatory motif, a common destiny for gene duplicates. BMC Evol Biol 7:215 (2007)

Mona S, Tommaseo-Ponzetta M, Brauer S, Sudoyo H, Marzuki S, Kayser M: Patterns of Y-chromosome diversity intersect with the trans-New Guinea hypothesis. Molecular biology and evolution 24:2546-2555 (2007a)

Mona S, Randi E, Tommaseo-Ponzetta M: Evolutionary history of the genus Sus inferred from cytochrome b sequences. Molecular Phylogenetics and Evolution 45:757-762 (2007b)

Consortium, Caggese C, Porcelli D, Barsanti P: Evolution of genes and genomes on the Drosophila phylogeny. Nature 450:203-218 (2007)

Cardone MF, Lomiento M, Teti MG, Misceo D, Roberto R, Capozzi O, D'Addabbo P, Ventura M, Rocchi M, Archidiacono N: Evolutionary history of chromosome 11 featuring four distinct centromere repositioning events in Catarrhini. Genomics 90:35-43 (2007)

Antonacci R, Vaccarelli G, Di Meo GP, Piccinni B, Miccoli MC, Cribiu EP, Perucatti A, Iannuzzi L, Ciccarese S: Molecular in situ hybridization analysis of sheep and goat BAC clones identifies the transcriptional orientation of T cell receptor gamma genes on chromosome 4 in bovids. Vet Res Commun 31:977-83 (2007)

Todoric-Zivanovic B, Marisavljevic D, Surace C, Cemerikic V, Markovic O, Krtolica K, Tatomirovic Z, Cikota B, Magic Z, Rocchi M: A Ph-negative chronic myeloid leukemia with a complex BCR/ABL rearrangement and a t(6;9)(p21;q34.1). Cancer Genet Cytogenet 166:180-185 (2006)

Storlazzi CT, Albano F, Locunsolo C, Lonoce A, Funes S, Guastadisegni MC, Cimarosto L, Impera L, D'Addabbo P, Panagopoulos I, Specchia G, Rocchi M: t(3;12)(q26;q14) in polycythemia vera is associated with upregulation of the HMGA2 gene. Leukemia 20:2190-2192 (2006)

She X, Liu G, Ventura M, Zhao S, Misceo D, Roberto R, Cardone MF, Rocchi M, Green ED, Archidiacono N, Eichler EE: A preliminary comparative analysis of primate segmental duplications shows elevated substitution rates and a great-ape expansion of intrachromosomal duplications. Genome Res 16:576-583 (2006)

Sbisa E, Mastropasqua G, Lefkimmiatis K, Caratozzolo MF, D'Erchia AM, Tullo A: Connecting p63 to cellular proliferation: The example of the adenosine deaminase target gene. Cell Cycle 5:205-212 (2006)

Saccone C, Lanave C, De Grassi A: Metazoan OXPHOS gene families: evolutionary forces at the level of mitochondrial and nuclear genomes. Biochim Biophys Acta 1757:1171-8 (2006)

De Grassi A, Lanave C, Saccone C: Evolution of ATP synthase subunit c and cytochrome c gene families in selected Metazoan classes. Gene 371:224-33 (2006)

D'Erchia AM, Tullo A, Lefkimmiatis K, Saccone C, Sbisa' E: The fatty acid synthase gene is a conserved p53 family target from worm to human. Cell Cycle 5:750-758 (2006)

D'Elia D, Catalano D, Licciulli F, Turi A, Tripoli G, Porcelli D, Saccone C, Caggese C: The MitoDrome database annotates and compares the OXPHOS nuclear genes of Drosophila melanogaster, Drosophila pseudoobscura and Anopheles gambiae. Mitochondrion 6:252-7 (2006)

Carbone L, Nergadze SG, Magnani E, Misceo D, Francesca Cardone M, Roberto R, Bertoni L, Attolini C, Francesca Piras M, de Jong P, Raudsepp T, Chowdhary BP, Guerin G, Archidiacono N, Rocchi M, Giulotto E: Evolutionary movement of centromeres in horse, donkey, and zebra. Genomics 87:777-782 (2006)

De Grassi A, Caggese C, D'Elia D, Lanave C, Pesole G, Saccone C: Evolution of nuclearly encoded mitochondrial genes in Metazoa. Gene 354:181-8 (2005)

Locke DP, Jiang Z, Pertz LM, Misceo D, Archidiacono N, Eichler EE: Molecular evolution of the human chromosome 15 pericentromeric region. Cytogenet Genome Res 108:73-82 (2005)

Minervini C, Marsano RM, Casieri P, Fanti L, Caizzi R, Pimpinelli S, Rocchi M, Viggiano L: HP1 and retrotransposons: liasons dangerous. Chromosome Res 13:120-120 (2005)

Misceo D, Cardone MF, Carbone L, D'Addabbo P, de Jong PJ, Rocchi M, Archidiacono N: Evolutionary history of chromosome 20. Mol Biol Evol 22:360-366 (2005)

Sardiello M, Tripoli G, Romito A, Minervini C, Viggiano L, Caggese C, Pesole G: Energy biogenesis: one key for coordinating two genomes. Trends Genet 21:12-6 (2005)

Tripoli G, D'Elia D, Barsanti P, Caggese C: Comparison of the oxidative phosphorylation (OXPHOS) nuclear genes in the genomes of Drosophila melanogaster, Drosophila pseudoobscura and Anopheles gambiae. Genome Biol 6:R11 (2005)

Zagaria A, Anelli L, Albano F, Tiziana Storlazzi C, Liso A, Grazia Roberti M, Buquicchio C, Liso V, Rocchi M, Specchia G: A fluorescence in situ hybridization study of complex t(9;22) in two chronic myelocytic leukemia cases with a masked Philadelphia chromosome. Cancer Genet Cytogenet 150:81-85 (2004)

Ventura M, Boniotto M, Pazienza M, Palumbo V, Cardone MF, Rocchi M, Tossi A, Amoroso A, Crovella S: Localization of b-defensin genes in non human primates. Eur J Histochem 48:185-190 (2004)

Storlazzi CT, Anelli L, Albano F, Zagaria A, Ventura M, Rocchi M, Panagopoulos I, Pannunzio A, Ottaviani E, Liso V, Specchia G: A novel chromosomal translocation t(3;7)(q26;q21) in myeloid leukemia resulting in overexpression of EVI1. Ann Hematol 83:78-83 (2004)

Specchia G, Albano F, Anelli L, Storlazzi CT, Zagaria A, Liso A, Pannunzio A, Pastore D, Mestice A, Greco G, Liso V, Rocchi M: Derivative chromosome 9 deletions in chronic myeloid leukemia are associated with loss of tumor suppressor genes. Leuk Lymphoma 45:689-694 (2004)

Marsano RM, Marconi S, Moschetti R, Barsanti P, Caggese C, Caizzi R: MAX, a novel retrotransposon of the BEL-Pao family, is nested within the Bari1 cluster at the heterochromatic h39 region of chromosome 2 in Drosophila melanogaster. Mol Genet Genomics 270:477-84 (2004)

Intini D, Fabris S, Storlazzi T, Otsuki T, Ciceri G, Verdelli D, Lombardi L, Rocchi M, Neri A: Identification of a novel IGH-MMSET fusion transcript in a human myeloma cell line with the t(4;14)(p16.3;q32) chromosomal translocation. Br J Haematol 126:437-439 (2004)

Albano F, Specchia G, Anelli L, Zagaria A, Storlazzi CT, Buquicchio C, Roberti MG, Liso V, Rocchi M: Genomic deletions on other chromosomes involved in variant t(9;22) chronic myeloid leukemia cases. Genes Chromosomes Cancer 36:353-360 (2003)

Fabris S, Storlazzi CT, Baldini L, Nobili L, Lombardi L, Maiolo AT, Rocchi M, Neri A: Heterogeneous pattern of chromosomal breakpoints involving the MYC locus in multiple myeloma. Genes Chromosomes Cancer 37:261-269 (2003)

Locke DP, Archidiacono N, Misceo D, Cardone MF, Deschamps S, Roe B, Rocchi M, Eichler EE: Refinement of a chimpanzee pericentric inversion breakpoint to a segmental duplication cluster. Genome Biol 4:R50 (2003a)

Locke DP, Segraves R, Carbone L, Archidiacono N, Albertson DG, Pinkel D, Eichler EE: Large-scale variation among human and great ape genomes determined by array comparative genomic hybridization. Genome Res 13:347-357 (2003b)

Marsano RM, Milano R, Minervini C, Moschetti R, Caggese C, Barsanti P, Caizzi R: Organization and possible origin of the Bari-1 cluster in the heterochromatic h39 region of Drosophila melanogaster. Genetica 117:281-9 (2003)

Sardiello M, Tripoli G, Oliva M, Santolamazza F, Moschetti R, Barsanti P, Lanave C, Caizzi R, Caggese C: A comparative study of the porin genes encoding VDAC, a voltage-dependent anion channel protein, in Anopheles gambiae and Drosophila melanogaster. Gene 317:111-5 (2003)

Specchia G, Albano F, Anelli L, Storlazzi CT, Zagaria A, Mancini M, Cuneo A, Pane F, Foa R, Manolelli F, Liso V, Rocchi M: Deletions on der(9) chromosome in adult Ph-positive acute lymphoblastic leukemia occur with a frequency similar to that observed in chronic myeloid leukemia. Leukemia 17:528-531 (2003)

Tullo A, Mastropasqua G, Bourdon JC, Centonze P, Gostissa M, Costanzo A, Levrero M, Del Sal G, Saccone C, Sbisa E: Adenosine deaminase, a key enzyme in DNA precursors control, is a new p73 target. Oncogene 22:8738-48 (2003)

Ballarati L, Piccini I, Carbone L, Archidiacono N, Rollier A, Marozzi A, Meneveri R, Ginelli E: Human genome dispersal and evolution of 4q35 duplications and interspersed LSau repeats. Gene 296:21-27 (2002)

Carbone L, Ventura M, Tempesta S, Rocchi M, Archidiacono N: Evolutionary history of chromosome 10 in primates. Chromosoma 111:267-272 (2002)

Cardone MF, Ventura M, Tempesta S, Rocchi M, Archidiacono N: Analysis of chromosome conservation in Lemur catta studied by chromosome paints and BAC/PAC probes. Chromosoma 111:348-356 (2002)

Saglio G, Storlazzi CT, Giugliano E, Surace C, Anelli L, Rege-Cambrin G, Zagaria A, Jimenez Velasco A, Heiniger A, Scaravaglio P, Torres Gomez A, Roman Gomez J, Archidiacono N, Banfi S, Rocchi M: A 76-kb duplicon maps close to the BCR gene on chromosome 22 and the ABL gene on chromosome 9: possible involvement in the genesis of the Philadelphia chromosome translocation. Proc Natl Acad Sci U S A 99:9882-9887 (2002)

Specchia G, Albano F, Anelli L, Storlazzi CT, Cimino G, Liso A, Zagaria A, Liso V, Rocchi M: Molecular cytogenetics characterization of a novel translocation involving chromosomes 17 and 19 in a Ph+ adult acute lymphoblastic leukaemia. Br J Haematol 119:488-491 (2002a)

Specchia G, Albano F, Anelli L, Storlazzi CT, Monaco M, Capalbo S, Rocchi M, Liso V: Concomitant tetrasomy 3q and trisomy 18 in CD5(-), CD13(+) chronic lymphocytic leukemia. Cancer Genet Cytogenet 133:160-163 (2002b)

Specchia G, Albano F, Storlazzi CT, Anelli L, Zagaria A, Liso V, Rocchi M: t(15;17) in acute promyelocytic leukemia is not associated with submicroscopic deletions on der(17). Haematologica 87:775-777 (2002c)

Storlazzi CT, Anelli L, Surace C, Lonoce A, Zagaria A, Nanni M, Curzi P, Rocchi M: Molecular cytogenetic characterization of a complex rearrangement involving chromosomes 9 and 22 in a case of Ph-negative chronic myeloid leukemia. Cancer Genet Cytogenet 136:141-145 (2002a)

Storlazzi CT, Specchia G, Anelli L, Albano F, Pastore D, Zagaria A, Rocchi M, Liso V: Breakpoint characterization of der(9) deletions in chronic myeloid leukemia patients. Genes Chromosomes Cancer 35:271-276 (2002b)

Surace C, Leszl A, Perilongo G, Rocchi M, Basso G, Sainati L: Fluorescent in situ hybridization (FISH) reveals frequent and recurrent numerical and structural abnormalities in hepatoblastoma with no informative karyotype. Med Pediatr Oncol 39:536-539 (2002)

Ventura M, Boniotto M, Cardone MF, Fulizio L, Archidiacono N, Rocchi M, Crovella S: Characterization of a highly repeated DNA sequence family in five species of the genus Eulemur. Gene 275:305-310 (2001)

Specchia G, Storlazzi CT, Cuneo A, Surace C, Mestice A, Pannunzio A, Rocchi M, Liso V: Acute promyelocytic leukemia with additional chromosome abnormalities in a renal transplant case. Ann Hematol 80:246-250 (2001a)

Specchia G, Mestice A, Clelia Storlazzi T, Anelli L, Pannunzio A, Grazia Roberti M, Rocchi M, Liso V: A novel translocation t(2;9)(q14;p12) in AML-M2 with an uncommon phenotype: myeloperoxidase-positive and myeloid antigen-negative. Leuk Res 25:501-507 (2001b)

Rosati M, Rocchi M, Storlazzi CT, Grimaldi G: Assignment to chromosome 12q24.33, gene organization and splicing of the human KRAB/FPB containing zinc finger gene ZNF84. Cytogenet Cell Genet 94:127-130 (2001)

Di Pierro M, Lu R, Uzzau S, Wang W, Margaretten K, Pazzani C, Maimone F, Fasano A: Zonula occludens toxin structure-function analysis: Identification of the fragment biologically active on tight junctions and of the zonulin receptor binding domain. Journal of Biological Chemistry 276:19160-19165 (2001)

De Benedictis L, Polizzi A, Cangiano G, Buttiglione M, Arbia S, Tiziana Storlazzi C, Rocchi M, Gennarini G: Alternative promoters drive the expression of the gene encoding the mouse axonal glycoprotein F3/contactin. Brain Res Mol Brain Res 95:55-74 (2001)

Vitelli F, Meloni I, Fineschi S, Favara F, Tiziana Storlazzi C, Rocchi M, Renieri A: Identification and characterization of mouse orthologs of the AMMECR1 and FACL4 genes deleted in AMME syndrome: orthology of Xq22.3 and MmuXF1-F3. Cytogenet Cell Genet 88:259-263 (2000)

Marzella R, Viggiano L, Miolla V, Storlazzi CT, Ricco A, Gentile E, Roberto R, Surace C, Fratello A, Mancini M, Archidiacono N, Rocchi M: Molecular cytogenetic resources for chromosome 4 and comparative analysis of phylogenetic chromosome IV in great apes. Genomics 63:307-313 (2000)

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