PhD School program in
Evolutionary and Environmental Sciences

Pubblicazioni su riviste ISI (dal 2005, non ridondanti)
Pubblications in ISI journals (2005-present)

  per le pubblicazioni fino al 2004
➜  for papers up to 2004

2011

Alkan C, Cardone MF, Catacchio CR, Antonacci F, O'Brien SJ, Ryder OA, Purgato S, Zoli M, Della Valle G, Eichler EE, Ventura M: Genome-wide characterization of centromeric satellites from multiple mammalian genomes. Genome Res 21:137-145 (2011).

Barbano R, Copetti M, Perrone G, Pazienza V, Muscarella LA, Balsamo T, Storlazzi CT, Ripoli M, Rinaldi M, Valori V, Latiano TP, Maiello E, Stanziale P, Carella M, Mangia A, Pellegrini F, Bisceglia M, Onetti Muda A, Altomare V, Murgo R, Fazio VM, Parrella P: High RAD51 mRNA expression characterize estrogen receptor-positive/progesteron receptor-negative breast cancer and is associated with patient's outcome. Int J of Cancer (2011).

Camerlingo R, Franco R, Tirino V, Cantile M, Rocchi M, La Rocca A, Martucci N, Botti G, Rocco G, Pirozzi G: Establishment and phenotypic characterization of the first human pulmonary blastoma cell line. Lung Cancer (2011).

Cecere E, Moro I, Wolf MA, Petrocelli A, Verlaque M, Sfriso A: The introduced seaweedGrateloupia turuturu(Rhodophyta, Halymeniales) in two Mediterranean transitional water systems. Botanica Marina 54:23-33 (2011).

Hormozdiari F, Alkan C, Ventura M, Hajirasouliha I, Malig M, Hach F, Yorukoglu D, Dao P, Bakhshi M, Sahinalp SC, Eichler EE: Alu repeat discovery and characterization within human genomes. Genome Res (2011).

Ippolito MP, Fasciano C, d’Aquino L, Tommasi F: Responses of antioxidant systems to lanthanum nitrate treatments in tomato plants during drought stress. Plant Biosystems in press (2011).

Locke DP, Hillier LW, Warren WC, Worley KC, Nazareth LV, Muzny DM, Yang SP, Wang Z, Chinwalla AT, Minx P, Mitreva M, Cook L, Delehaunty KD, Fronick C, Schmidt H, Fulton LA, Fulton RS, Nelson JO, Magrini V, Pohl C, Graves TA, Markovic C, Cree A, Dinh HH, Hume J, Kovar CL, Fowler GR, Lunter G, Meader S, Heger A, Ponting CP, Marques-Bonet T, Alkan C, Chen L, Cheng Z, Kidd JM, Eichler EE, White S, Searle S, Vilella AJ, Chen Y, Flicek P, Ma J, Raney B, Suh B, Burhans R, Herrero J, Haussler D, Faria R, Fernando O, Darre F, Farre D, Gazave E, Oliva M, Navarro A, Roberto R, Capozzi O, Archidiacono N, Valle GD, Purgato S, Rocchi M, Konkel MK, Walker JA, Ullmer B, Batzer MA, Smit AF, Hubley R, Casola C, Schrider DR, Hahn MW, Quesada V, Puente XS, Ordonez GR, Lopez-Otin C, Vinar T, Brejova B, Ratan A, Harris RS, Miller W, Kosiol C, Lawson HA, Taliwal V, Martins AL, Siepel A, Roychoudhury A, Ma X, Degenhardt J, Bustamante CD, Gutenkunst RN, Mailund T, Dutheil JY, Hobolth A, Schierup MH, Ryder OA, Yoshinaga Y, de Jong PJ, Weinstock GM, Rogers J, Mardis ER, Gibbs RA, Wilson RK: Comparative and demographic analysis of orang-utan genomes. Nature 469:529-33 (2011).

Maiorano P, Mastrototaro F, Beqiraj S, Costantino G, Kashta L, Gherardi M, Sion L, D'Ambrosio P, Carlucci R, D'Onghia G, Tursi A: Bioecological Study of the Benthic Communities on the Soft Bottom of the Vlora Gulf (Albania). Journal of Coastal Research 270:95-105 (2011).

Mastrodonato M, Calamita G, Rossi R, Mentino D, Bonfrate L, Portincasa P, Ferri D, Liquori GE: Altered distribution of caveolin-1 in early liver steatosis. Eur J Clin Invest (2011).

Scillitani G, Moramarco AM, Rossi R, M. M: Glycopattern analysis and structure of egg extra-cellular matrix in the Apennine yellow-bellied toad, Bombina pachypus (Anura: Bombinatoridae). Folia Histochem Cyto in press (2011).

Pugliese N, Circella E, Pazzani C, Pupillo A, Camarda A: Validation of a seminested PCR approach for rapid detection of Salmonella enterica subsp. enterica serovar Gallinarum. J Microbiol Methods (2011).

Tursi A, Corselli C, Bushati S, Beqiraj S: The Vlora Project. Journal of Coastal Research 270:1-5 (2011).

2010      

2. Albano F, Anelli L, Zagaria A, Coccaro N, D'Addabbo P, Liso V, Rocchi M, Specchia G: Genomic segmental duplications on the basis of the t(9;22) rearrangement in chronic myeloid leukemia. Oncogene 29:2509-2516 (2010)

3. Antonacci F, Kidd JM, Marques-Bonet T, Teague B, Ventura M, Girirajan S, Alkan C, Campbell CD, Vives L, Malig M, Rosenfeld JA, Ballif BC, Shaffer LG, Graves TA, Wilson RK, Schwartz DC, Eichler EE: A large and complex structural polymorphism at 16p12.1 underlies microdeletion disease risk. Nat Genet 42:745-750 (2010)

4. Aresta M, Acquaviva MI, Baruzzi F, Lo Noce RM, Matarante A, Narracci M, Stabili L, Cavallo RA: Isolation and characterization of polyphenols-degrading bacteria from olive-mill wastewaters polluted soil. World Journal of Microbiology & Biotechnology 26:639-647 (2010)

5. Aschero S, Vallero S, Morra I, Impera L, Forni M, Sandri A, Basso ME, Storlazzi CT, Giordano F, Fidani P, De Ioris MA, di Montezemolo LC: A complex karyotype including a t(2;11) in a paediatric ependymoma: case report and review of the literature. J Neurooncol 99:141-146 (2010)

6. Baldacconi R, Cardone F, Longo C, Mercurio M, Nonnis Marzano C, Gaino E, Corriero G: Transplantation of Spongia officinalis L. (Porifera, Demospongiae): a technical approach for restocking this endangered species. Marine Ecology 31:309-317 (2010)

7. Balsamo M, Albertelli G, Ceccherelli VU, Coccioni R, Colangelo MA, Curini-Galletti M, Danovaro R, D'Addabbo R, De Leonardis C, Fabiano M, Frontalini F, Gallo M, Gambi C, Guidi L, Moreno M, Pusceddu A, Sandulli R, Semprucci F, Todaro MA, Tongiorgi P: Meiofauna of the Adriatic Sea: present knowledge and future perspectives. Chemistry and Ecology 26:45-63 (2010)

8. Capezzuto F, Carlucci R, Maiorano P, Sion L, Battista D, Giove A, Indennidate A, Tursi A, D'Onghia G: The bathyal benthopelagic fauna in the north-western Ionian Sea: Structure, patterns and interactions. Chemistry and Ecology 26:199-217 (2010)

9. Cardone F, Gaino E, Corriero G: The budding process in Tethya citrina Sara & Melone (Porifera, Demospongiae) and the incidence of post-buds in sponge population maintenance. Journal of Experimental Marine Biology and Ecology 389:93-100 (2010)

10. Cerrano C, Danovaro R, Gambi C, Pusceddu A, Riva A, Schiaparelli S: Gold coral (Savalia savaglia) and gorgonian forests enhance benthic biodiversity and ecosystem functioning in the mesophotic zone. Biodiversity and Conservation 19:153-167 (2010)

11. Chebbi N, Mastrototaro F, Missaoui H: Spatial distribution of ascidians in two Tunisian lagoons of the Mediterranean Sea. Cahiers de Biologie Marine 51:117-127 (2010)

12. Corcelli A, Saponetti MS, Zaccagnino P, Lopalco P, Mastrodonato M, Liquori GE, Lorusso M: Mitochondria isolated in nearly isotonic KCl buffer: Focus on cardiolipin and organelle morphology. Biochimica et Biophysica Acta - Biomembranes 1798:681-687 (2010)

13. Costantino G, Mastrototaro F, Tursi A, Torchia G, Pititto F, Salerno G, Lembo G, Sion L, D'Onghia G, Carlucci R, Maiorano P: Distribution and bio-ecological features of Posidonia oceanica meadows along the coasts of the southern Adriatic and northern ionian seas. Chemistry and Ecology 26:91-104 (2010)

14. D'Alessandro V, Muscarella LA, la Torre A, Bisceglia M, Parrella P, Scaramuzzi G, Storlazzi CT, Trombetta D, Kok K, De Cata A, Sperandeo M, Zelante L, Carella M, Vendemiale G: Molecular analysis of the HuD gene in neuroendocrine lung cancers. Lung Cancer 67:69-75 (2010)

15. D'Onghia G, Maiorano P, Sion L, Giove A, Capezzuto F, Carlucci R, Tursi A: Effects of deep-water coral banks on the abundance and size structure of the megafauna in the Mediterranean Sea. Deep-Sea Research Part II: Topical Studies in Oceanography 57:397-411 (2010)

16. Dallabona C, Marsano RM, Arzuffi P, Ghezzi D, Mancini P, Zeviani M, Ferrero I, Donnini C: Sym1, the yeast ortholog of the MPV17 human disease protein, is a stress-induced bioenergetic and morphogenetic mitochondrial modulator. Hum Mol Genet 19:1098-107 (2010)

17. De Gara L, Locato V, Dipierro S, de Pinto MC: Redox homeostasis in plants. The challenge of living with endogenous oxygen production. Respiratory Physiology & Neurobiology 173:S13-S19 (2010)

18. Della Torre C, Petochi T, Corsi I, Dinardo MM, Baroni D, Alcaro L, Focardi S, Tursi A, Marino G, Frigeri A, Amato E: DNA damage, severe organ lesions and high muscle levels of As and Hg in two benthic fish species from a chemical warfare agent dumping site in the Mediterranean Sea. Science of the Total Environment 408:2136-2145 (2010)

19. Di Tommaso S, Antonacci R, Ciccarese S, Massari S: Extensive analysis of D-J-C arrangements allows the identification of different mechanisms enhancing the diversity in sheep T cell receptor beta-chain repertoire. BMC Genomics 11:3 (2010)

20. Falace A, Alongi G, Cormaci M, Furnari G, Curiel D, Cecere E, Petrocelli A: Changes in the benthic algae along the Adriatic Sea in the last three decades. Chemistry and Ecology 26:77-90 (2010)

21. Fattorusso C, Persico M, Calcinai B, Cerrano C, Parapini S, Taramelli D, Novellino E, Romano A, Scala F, Fattorusso E, Taglialatela-Scafati O: Manadoperoxides A-D from the Indonesian Sponge Plakortis cfr. simplex. Further Insights on the Structure-Activity Relationships of Simple 1,2-Dioxane Antimalarials. Journal of Natural Products 73:1138-1145 (2010)

22. Fava F, Bavestrello G, Valisano L, Cerrano C: Survival, growth and regeneration in explants of four temperate gorgonian species in the Mediterranean Sea. Italian Journal of Zoology 77:44-52 (2010)

23. Gissi C, Pesole G, Mastrototaro F, Iannelli F, Guida V, Griggio F: Hypervariability of ascidian mitochondrial gene order: Exposing the Myth of deuterostome organelle genome stability. Molecular biology and evolution 27:211-215 (2010)

24. Gravili C, Belmonte G, Cecere E, Denitto F, Giangrande A, Guidetti P, Longo C, Mastrototaro F, Moscatello S, Petrocelli A, Piraino S, Terlizzi A, Boero F: Nonindigenous species along the Apulian coast, Italy. Chemistry and Ecology 26:121-142 (2010)

25. Guastadisegni MC, Lonoce A, Impera L, Di Terlizzi F, Fugazza G, Aliano S, Grasso R, Cluzeau T, Raynaud S, Rocchi M, Storlazzi CT: CBFA2T2 and C20orf112: two novel fusion partners of RUNX1 in acute myeloid leukemia. Leukemia 24:1516-9 (2010)

26. Iacobucci I, Ferrari A, Lonetti A, Papayannidis C, Guadaguolo V, Storlazzi C, Ottaviani E, Abbenante MC, Paolini S, Parisi S, Cilloni D, Soverini S, Pane F, Vitale A, Lama B, Foa R, Baccarani M, Martinelli G: Loss of the Tumor Suppressor Gene Cdkn2a/Arf by Genomic Deletions Is a Frequent Event in Adult Bcr-Abl1 Positive Acute Lymphoblastic Leukemia (All) Patients and Contributes to Disease Progression. Haematologica-the Hematology Journal 95:227-228 (2010)

27. Ippolito MP, Fasciano C, D'Aquino L, Morgana M, Tommasi F: Responses of antioxidant systems after exposition to rare earths and their role in chilling stress in common duckweed (Lemna minor L.): A defensive weapon or a boomerang? Archives of Environmental Contamination and Toxicology 58:42-52 (2010)

28. Kidd JM, Sampas N, Antonacci F, Graves T, Fulton R, Hayden HS, Alkan C, Malig M, Ventura M, Giannuzzi G, Kallicki J, Anderson P, Tsalenko A, Yamada NA, Tsang P, Kaul R, Wilson RK, Bruhn L, Eichler EE: Characterization of missing human genome sequences and copy-number polymorphic insertions. Nat Methods 7:365-371 (2010)

29. Liquori GE, Mastrodonato M, Rossi R, Scillitani G, Gena P, Portincasa P, Calamita G, Ferri D: Altered membrane glycoprotein targeting in cholestatic hepatocytes. European Journal of Clinical Investigation 40:393-400 (2010)

30. Liu GE, Ventura M, Cellamare A, Chen L, Cheng Z, Zhu B, Li C, Song J, Eichler EE: Analysis of recent segmental duplications in the bovine genome. BMC Genomics 10:571 (2010)

31. Longo C, Corriero G, Licciano M, Stabili L: Bacterial accumulation by the Demospongiae Hymeniacidon perlevis: A tool for the bioremediation of polluted seawater. Marine Pollution Bulletin 60:1182-1187 (2010)

32. Maiorano P, Sion L, Carlucci R, Capezzuto F, Giove A, Costantino G, Panza M, D'Onghia G, Tursi A: The demersal faunal assemblage of the north-western Ionian Sea (central Mediterranean): Current knowledge and perspectives. Chemistry and Ecology 26:219-240 (2010)

33. Marsoni M, Cantara C, De Pinto MC, Gadaleta C, De Gara L, Bracale M, Vannini C: Exploring the soluble proteome of Tobacco Bright Yellow-2 cells at the switch towards different cell fates in response to heat shocks. Plant Cell Environ 33:1161-75 (2010)

34. Marzano CN, Gravina MF, Fianchini A, Portacci G, Gherardi M, Tursi A, Corriero G: The macrozoobenthos of the Karavasta lagoon system (Albania): local assemblages and geographical comparisons. Marine Ecology:no-no (2010)

35. Mastrototaro F, D'Onghia G, Corriero G, Matarrese A, Maiorano P, Panetta P, Gherardi M, Longo C, Rosso A, Sciuto F, Sanfilippo R, Gravili C, Boero F, Taviani M, Tursi A: Biodiversity of the white coral bank off Cape Santa Maria di Leuca (Mediterranean Sea): An update. Deep-Sea Research Part II: Topical Studies in Oceanography 57:412-430 (2010)

36. Minervini CF, Ruggieri S, Traversa M, D'Aiuto L, Marsano RM, Leronni D, Centomani I, De Giovanni C, Viggiano L: Evidences for insulator activity of the 5'UTR of the Drosophila melanogaster LTR-retrotransposon ZAM. Mol Genet Genomics 283:503-9 (2010)

37. Paciolla C, Diemerico S, Tommasi F, Scrugli A: Karyomorphological and biochemical studies in Glebionis coronaria (L.) Spach and Glebionis segetum (L.) Fourreau from Italy. Plant Biosystems 144:563-567 (2010)

38. Porcelli D, Oliva M, Duchi S, Latorre D, Cavaliere V, Barsanti P, Villani G, Gargiulo G, Caggese C: Genetic, Functional and Evolutionary Characterization of scox, the Drosophila melanogaster Ortholog of the Human SCO1 Gene. Mitochondrion (2010)

39. Pozzolini M, Valisano L, Cerrano C, Menta M, Schiaparelli S, Bavestrello G, Benatti U, Giovine M: Influence of rocky substrata on three-dimensional sponge cells model development. In Vitro Cellular & Developmental Biology-Animal 46:140-147 (2010)

40. Previati M, Scinto A, Cerrano C, Osinga R: Oxygen consumption in Mediterranean octocorals under different temperatures. Journal of Experimental Marine Biology and Ecology 390:39-48 (2010)

41. Rochet MJ, Trenkel VM, Carpentier A, Coppin F, de Sola LG, Leaute JP, Mahe JC, Maiorano P, Mannini A, Murenu M, Piet G, Politou CY, Reale B, Spedicato MT, Tserpes G, Bertrand JA: Do changes in environmental and fishing pressures impact marine communities? An empirical assessment. Journal of Applied Ecology 47:741-750 (2010)

42. Rosso A, Vertino A, Di Geronimo I, Sanfilippo R, Sciuto F, Di Geronimo R, Violanti D, Corselli C, Taviani M, Mastrototaro F, Tursi A: Hard- and soft-bottom thanatofacies from the Santa Maria di Leuca deep-water coral province, Mediterranean. Deep-Sea Research Part II: Topical Studies in Oceanography 57:360-379 (2010)

43. Scillitani G, Mastrodonato M, Liquori GE, Ferri D: Co-distribution of glycoconjugates and H+, K+-ATPase in the parietal cells of the Greater Horseshoe Bat, Rhinolophus ferrumequinum (Schreber, 1774). Zoological Science 27:433-439 (2010)

44. Stabili L, Gravili C, Boero F, Tredici SM, Alifano P: Susceptibility to Antibiotics of Vibrio sp AO1 Growing in Pure Culture or in Association with its Hydroid Host Aglaophenia octodonta (Cnidaria, Hydrozoa). Microbial Ecology 59:555-562 (2010)

45. Storlazzi CT, Lonoce A, Guastadisegni MC, Trombetta D, D'Addabbo P, Daniele G, L'Abbate A, Macchia G, Surace C, Kok K, Ullmann R, Purgato S, Palumbo O, Carella M, Ambros PF, Rocchi M: Gene amplification as double minutes or homogeneously staining regions in solid tumors: Origin and structure. Genome Res 20:1198-1206 (2010)

46. Vertino A, Savini A, Rosso A, Di Geronimo I, Mastrototaro F, Sanfilippo R, Gay G, Etiope G: Benthic habitat characterization and distribution from two representative sites of the deep-water SML Coral Province (Mediterranean). Deep-Sea Research Part II: Topical Studies in Oceanography 57:380-396 (2010)

47. Vezzulli L, Previati M, Pruzzo C, Marchese A, Bourne DG, Cerrano C, Consortium V: Vibrio infections triggering mass mortality events in a warming Mediterranean Sea. Environmental Microbiology 12:2007-2019 (2010)

48. Vietti RC, Albertelli G, Aliani S, Bava S, Bavestrello G, Cecchi LB, Bianchi CN, Bozzo E, Capello M, Castellano M, Cerrano C, Chiantore M, Corradi N, Cocito S, Cutroneo L, et al.: The Ligurian Sea: present status, problems and perspectives. Chemistry and Ecology 26:319-340 (2010)

Mol Cancer 9:120 (2010) 1. Albano F, Anelli L, Zagaria A, Coccaro N, Casieri P, Rossi AR, Vicari L, Liso V, Rocchi M, Specchia G: Non random distribution of genomic features in breakpoint regions involved in chronic myeloid leukemia cases with variant t(9;22) or additional chromosomal rearrangements.

2009

49. Albano F, Anelli L, Zagaria A, Liso V, Rocchi M, Specchia G: MIRN199B downregulation in chronic myeloid leukaemia is associated with deletions on der(9). Br J Haematol 144:271-3 (2009)

50. Angawi RF, Calcinai B, Cerrano C, Dien HA, Fattorusso E, Scala F, Taglialatela-Scafati O: Dehydroconicasterol and Aurantoic Acid, a Chlorinated Polyene Derivative, from the Indonesian Sponge Theonella swinhoei. Journal of Natural Products 72:2195-2198 (2009)

51. Antonacci F, Kidd JM, Marques-Bonet T, Ventura M, Siswara P, Jiang Z, Eichler EE: Characterization of six human disease-associated inversion polymorphisms. Hum Mol Genet 18:2555-66 (2009)

52. Armirotti A, Damonte G, Pozzolini M, Mussino F, Cerrano C, Salis A, Benatti U, Giovine M: Primary Structure and Post-Translational Modifications of Silicatein Beta from the Marine Sponge Petrosia ficiformis (Poiret, 1789). Journal of Proteome Research 8:3995-4004 (2009)

53. Baldacconi R, Corriero G: Effects of the spread of the alga Caulerpa racemosa var. cylindracea on the sponge assemblage from coralligenous concretions of the Apulian coast (Ionian Sea, Italy). Marine Ecology 30:337-345 (2009)

54. Basile G, Cerrano C, Radjasa O, Povero P, Zocchi E: ADP-ribosyl cyclase and abscisic acid are involved in the seasonal growth and in post-traumatic tissue regeneration of Mediterranean sponges. Journal of Experimental Marine Biology and Ecology 381:10-17 (2009)

55. Bekpen C, Marques-Bonet T, Alkan C, Antonacci F, Leogrande MB, Ventura M, Kidd JM, Siswara P, Howard JC, Eichler EE: Death and resurrection of the human IRGM gene. PLoS Genet 5:e1000403 (2009)

56. Capozzi O, Purgato S, D'Addabbo P, Archidiacono N, Battaglia P, Baroncini A, Capucci A, Stanyon R, Della Valle G, Rocchi M: Evolutionary descent of a human chromosome 6 neocentromere: a jump back to 17 million years ago. Genome Res 19:778-784 (2009)

57. Carbone L, D'Addabbo P, Cardone MF, Teti MG, Misceo D, Vessere GM, de Jong PJ, Rocchi M: A satellite-like sequence, representing a "clone gap" in the human genome, was likely involved in the seeding of a novel centromere in macaque. Chromosoma 118:269-277 (2009)

58. Carlier A, Le Guilloux E, Olu K, Sarrazin J, Mastrototaro F, Taviani M, Clavier J: Trophic relationships in a deep mediterranean cold-water coral bank (Santa Maria di Leuca, Ionian sea). Marine Ecology Progress Series 397:125-137 (2009)

59. Carlucci R, Capezzuto F, Maiorano P, Sion L, D'Onghia G: Distribution, population structure and dynamics of the black anglerfish (Lophius budegassa) (Spinola, 1987) in the Eastern Mediterranean Sea. Fisheries Research 95:76-87 (2009)

60. Carlucci R, Giuseppe L, Porzia M, Francesca C, Alessandra MC, Letizia S, Teresa SM, Nicola U, Angelo T, D'Onghia G: Nursery areas of red mullet (Mullus barbatus), hake (Merluccius merluccius) and deep-water rose shrimp (Parapenaeus longirostris) in the Eastern-Central Mediterranean Sea. Estuarine, Coastal and Shelf Science 83:529-538 (2009)

61. Cavallo RA, Acquaviva MI, Stabili L: Culturable heterotrophic bacteria in seawater and Mytilus galloprovincialis from a Mediterranean area (Northern Ionian Sea-Italy). Environmental Monitoring and Assessment 149:465-475 (2009)

62. Cerrano C, Bertolino M, Valisano L, Bavestrello G, Calcinai B: Epibiotic demosponges on the Antarctic scallop Adamussium colbecki (Smith, 1902) and the cidaroid urchins Ctenocidaris perrieri Koehler, 1912 in the nearshore habitats of the Victoria Land, Ross Sea, Antarctica. Polar Biology 32:1067-1076 (2009)

63. Chlamydas S, Heun P, Dimitri P, Moschetti R, Barsanti P, Caizzi R: The paracentric inversion In(2Rh)PL alters the centromeric organization of chromosome 2 in Drosophila melanogaster. Chromosome Res 17:1-9 (2009)

64. Costa V, Casamassimi A, Roberto R, Gianfrancesco F, Matarazzo M, D'Urso M, D'Esposito M, Rocchi M, Ciccodicola A: DDX11L: a novel transcript family emerging from human subtelomeric regions. BMC Genomics 10:250 (2009)

65. d'Aquino L, de Pinto MC, Nardi L, Morgana M, Tommasi F: Effect of some light rare earth elements on seed germination, seedling growth and antioxidant metabolism in Triticum durum. Chemosphere 75:900-905 (2009)

66. D'Onghia G, Maiorano P, Capezzuto F, Carlucci R, Battista D, Giove A, Sion L, Tursi A: Further evidences of deep-sea recruitment of Aristeus antennatus (Crustacea: Decapoda) and its role in the population renewal on the exploited bottoms of the Mediterranean. Fisheries Research 95:236-245 (2009)

67. Degenhardt JD, de Candia P, Chabot A, Schwartz S, Henderson L, Ling B, Hunter M, Jiang Z, Palermo RE, Katze M, Eichler EE, Ventura M, Rogers J, Marx P, Gilad Y, Bustamante CD: Copy Number Variation of CCL3-like Genes Affects Rate of Progression to Simian-AIDS in Rhesus Macaques (Macaca mulatta). PLoS Genetics 5:e1000346 (2009)

68. Dencic-Fekete M, Dordevic V, Storlazzi CT, Jankovic G, Bogdanovic A, Jovanovic J, Rocchi M, Todoric-Zivanovic B, Strnad M, Gotic M: t(5;6;12) associated with resistance to imatinib mesylate in chronic myeloid leukemia. Int J Hematol 89:508-512 (2009)

69. Dimitri P, Caizzi R, Giordano E, Carmela Accardo M, Lattanzi G, Biamonti G: Constitutive heterochromatin: a surprising variety of expressed sequences. Chromosoma 118:419-35 (2009)

70. Fattorusso E, Romano A, Taglialatela-Scafati O, Irace C, Maffettone C, Bavestrello G, Cerrano C: Oxygenated cembranoids of the decaryiol type from the Indonesian soft coral Lobophytum sp. Tetrahedron 65:2898-2904 (2009)

71. Fava F, Ponti M, Scinto A, Calcinai B, Cerrano C: Possible effects of human impacts on epibenthic communities and coral rubble features in the marine Park of Bunaken (Indonesia). Estuarine Coastal and Shelf Science 85:151-156 (2009)

72. Gaino E, Mercurio M, Sciscioli M, Corriero G: Choanocyte chambers in unreleased buds of Tethya seychellensis (Wright, 1881) (Porifera, Demospongiae). Italian Journal of Zoology 76:64-69 (2009)

73. Garrabou J, Coma R, Bensoussan N, Bally M, Chevaldonne P, Cigliano M, Diaz D, Harmelin JG, Gambi MC, Kersting DK, Ledoux JB, Lejeusne C, Linares C, Marschal C, Perez T, Ribes M, Romano JC, Serrano E, Teixido N, Torrents O, Zabala M, Zuberer F, Cerrano C: Mass mortality in Northwestern Mediterranean rocky benthic communities: effects of the 2003 heat wave. Global Change Biology 15:1090-1103 (2009)

74. Giancaspero TA, Locato V, de Pinto MC, De Gara L, Barile M: The occurrence of riboflavin kinase and FAD synthetase ensures FAD synthesis in tobacco mitochondria and maintenance of cellular redox status. FEBS J 276:219-31 (2009)

75. Girirajan S, Chen L, Graves T, Marques-Bonet T, Ventura M, Fronick C, Fulton L, Rocchi M, Fulton RS, Wilson RK, Mardis ER, Eichler EE: Sequencing human-gibbon breakpoints of synteny reveals mosaic new insertions at rearrangement sites. Genome Res 19:178-190 (2009)

76. Gorunova L, Vult von Steyern F, Storlazzi CT, Bjerkehagen B, Folleras G, Heim S, Mandahl N, Mertens F: Cytogenetic analysis of 101 giant cell tumors of bone: nonrandom patterns of telomeric associations and other structural aberrations. Genes Chromosomes Cancer 48:583-602 (2009)

77. Iacobucci I, Storlazzi CT, Cilloni D, Lonetti A, Ottaviani E, Soverini S, Astolfi A, Chiaretti S, Vitale A, Messa F, Impera L, Baldazzi C, D'Addabbo P, Papayannidis C, Lonoce A, Colarossi S, Vignetti M, Piccaluga PP, Paolini S, Russo D, Pane F, Saglio G, Baccarani M, Foa R, Martinelli G: Identification and molecular characterization of recurrent genomic deletions on 7p12 in the IKZF1 gene in a large cohort of BCR-ABL1-positive acute lymphoblastic leukemia patients: on behalf of Gruppo Italiano Malattie Ematologiche dell'Adulto Acute Leukemia Working Party (GIMEMA AL WP). Blood 114:2159-67 (2009)

78. Klajn A, Ferrai C, Stucchi L, Prada I, Podini P, Baba T, Rocchi M, Meldolesi J, D'Alessandro R: The rest repression of the neurosecretory phenotype is negatively modulated by BHC80, a protein of the BRAF/HDAC complex. J Neurosci 29:6296-6307 (2009)

79. Krstic AD, Impera L, Guc-Scekic M, Lakic N, Djokic D, Slavkovic B, Storlazzi CT: A complex rearrangement involving cryptic deletion of ETV6 and CDKN1B genes in a case of childhood acute lymphoblastic leukemia. Cancer Genet Cytogenet 195:125-31 (2009)

80. Lazzi C, Bove CG, Marsano RM, Neviani E: Transcriptional analysis of the gdhA gene in Streptococcus thermophilus. J Appl Microbiol 107:1358-66 (2009)

81. Lefkimmiatis K, Caratozzolo MF, Merlo P, D'Erchia AM, Navarro B, Levrero M, Sbisa E, Tullo A: p73 and p63 sustain cellular growth by transcriptional activation of cell cycle progression genes. Cancer Research 69:8563-8571 (2009)

82. Liquori GE, Calamita G, Cascella D, Mastrodonato M, Portincasa P, Ferri D: An innovative methodology for the automated morphometric and quantitative estimation of liver steatosis. Histol Histopathol 24:49-60 (2009)

83. Locato V, de Pinto MC, De Gara L: Different involvement of the mitochondrial, plastidial and cytosolic ascorbate-glutathione redox enzymes in heat shock responses. Physiologia Plantarum 135:296-306 (2009)

84. Mangiulli M, Valletti A, Caratozzolo MF, Tullo A, Sbisa E, Pesole G, D'Erchia AM: Identification and functional characterization of two new transcriptional variants of the human p63 gene. Nucleic Acids Research 37:6092-6104 (2009)

85. Marques-Bonet T, Kidd JM, Ventura M, Graves TA, Cheng Z, Hillier LW, Jiang Z, Baker C, Malfavon-Borja R, Fulton LA, Alkan C, Aksay G, Girirajan S, Siswara P, Chen L, Cardone MF, Navarro A, Mardis ER, Wilson RK, Eichler EE: A burst of segmental duplications in the genome of the African great ape ancestor. Nature 457:877-881 (2009)

86. Martinelli G, Iacobucci I, Storlazzi CT, Vignetti M, Paoloni F, Cilloni D, Soverini S, Vitale A, Chiaretti S, Cimino G, Papayannidis C, Paolini S, Elia L, Fazi P, Meloni G, Amadori S, Saglio G, Pane F, Baccarani M, Foa R: IKZF1 (Ikaros) Deletions in BCR-ABL1-Positive Acute Lymphoblastic Leukemia Are Associated With Short Disease-Free Survival and High Rate of Cumulative Incidence of Relapse: A GIMEMA AL WP Report. Journal of Clinical Oncology 27:5202-5207 (2009)

87. Massari S, Bellahcene F, Vaccarelli G, Carelli G, Mineccia M, Lefranc MP, Antonacci R, Ciccarese S: The deduced structure of the T cell receptor gamma locus in Canis lupus familiaris. Mol Immunol 46:2728-36 (2009)

88. Mastrodonato M, Calamita G, Rossi R, Scillitani G, Liquori GE, Ferri D: Expression of H+,K+-ATPase and glycopattern analysis in the gastric glands of Rana esculenta. Journal of Histochemistry and Cytochemistry 57:215-225 (2009)

89. Minervini CF, Viggiano L, Caizzi R, Marsano RM: Identification of novel LTR retrotransposons in the genome of Aedes aegypti. Gene 440:42-9 (2009)

90. Misceo D, Rocchi M, van der Hagen CB, Frengen E: A partial trisomy 1q patient with a deletion 1q22 and an insertion 1(q42q44) into 1q22. Am J Med Genet A 149A:290-293 (2009)

91. Nicholas TJ, Cheng Z, Ventura M, Mealey K, Eichler EE, Akey JM: The genomic architecture of segmental duplications and associated copy number variants in dogs. Genome Res 19:491-9 (2009)

92. Pugliese N, Maimone F, Scrascia M, Materu SF, Pazzani C: SXT-related integrating conjugative element and IncC plasmids in Vibrio cholerae O1 strains in Eastern Africa. J Antimicrob Chemother 63:438-42 (2009)

93. Scrascia M, Pugliese N, Maimone F, Mohamud KA, Ali IA, Grimont PA, Pazzani C: Cholera in Ethiopia in the 1990 s: epidemiologic patterns, clonal analysis, and antimicrobial resistance. Int J Med Microbiol 299:367-372 (2009)

94. Scrascia M, Pugliese N, Maimone F, Mohamud KA, Grimont PA, Materu SF, Pazzani C: Clonal relationship among Vibrio cholerae O1 El Tor strains isolated in Somalia. Int J Med Microbiol 299:203-207 (2009)

95. Stabili L, Pagliara P: Effect of zinc on lysozyme-like activity of the seastar Marthasterias glacialis (Echinodermata, Asteroidea) mucus. Journal of Invertebrate Pathology 100:189-192 (2009)

96. Stabili L, Schirosi R, Licciano M, Giangrande A: The mucus of Sabella spallanzanii (Annelida, Polychaeta): Its involvement in chemical defence and fertilization success. Journal of Experimental Marine Biology and Ecology 374:144-149 (2009)

97. Trageser D, Iacobucci I, Nahar R, Duy C, von Levetzow G, Klemm L, Park E, Schuh W, Gruber T, Herzog S, Kim YM, Hofmann WK, Li A, Storlazzi CT, Jack HM, Groffen J, Martinelli G, Heisterkamp N, Jumaa H, Muschen M: Pre-B cell receptor-mediated cell cycle arrest in Philadelphia chromosome-positive acute lymphoblastic leukemia requires IKAROS function. J Exp Med 206:1739-1753 (2009)

98. Trombetta D, Mertens F, Lonoce A, D'Addabbo P, Rennstam K, Mandahl N, Storlazzi CT: Characterization of a hotspot region on chromosome 12 for amplification in ring chromosomes in atypical lipomatous tumors. Genes Chromosomes Cancer 48:993-1001 (2009)

2008

99. Albano F, Anelli L, Zagaria A, Lonoce A, La Starza R, Liso V, Rocchi M, Specchia G: Extramedullary molecular evidence of the 5'KIAA1509/3'PDGFRB fusion gene in chronic eosinophilic leukemia. Leuk Res 32:347-351 (2008)

100. Albano F, Anelli L, Zagaria A, Pannunzio A, Liso V, Rocchi M, Specchia G: Downregulated expression of genes mapping on chromosome 9 in chronic myeloid leukemia cases bearing genomic deletions on der(9). Leukemia 23:813-816 (2008)

101. Antonacci R, Di Tommaso S, Lanave C, Cribiu EP, Ciccarese S, Massari S: Organization, structure and evolution of 41kb of genomic DNA spanning the D-J-C region of the sheep TRB locus. Mol Immunol 45:493-509 (2008)

102. Antonacci R, Mineccia M, Miccoli MC, Piccinni B, El Ashmaoui H, Hassanane MS, Massari S, Ciccarese S: Genomic organization of Camelus dromedarius TRD locus as drawn from the T-cell receptor delta chain repertoire. Chromosome Res 16:1049-1049 (2008)

103. Bavestrello G, Cerrano C, Di Camillo C, Puce S, Romagnoli T, Tazioli S, Totti C: The ecology of protists epibiontic on marine hydroids. Journal of the Marine Biological Association of the United Kingdom 88:1611-1617 (2008)

104. Bottalico A, Delle Foglie CI, M. F: Growth and reproductive phenology of Pterocladiella capillacea (Rhodophyta: Gelidiales) from the southern Adriatic Sea. Botanica Marina 51:124-131 (2008)

105. Bottalico A, Felicini GP, Delle Foglie CI, Perrone C: Developmental stages of attachment of in vitro protoplasts in two Mediterranean Valonia species (Siphonocladales, Chlorophyta). Plant Biosystems 142:99-105 (2008)

106. Calamita G, Ferri D, Gena P, Carreras FI, Liquori GE, Portincasa P, Marinelli RA, Svelto M: Altered expression and distribution of aquaporin-9 in the liver of rat with obstructive extrahepatic cholestasis. Am J Physiol-Gastro Liver Physiol 295:G682-G690 (2008)

107. Calcinai B, Cerrano C, Iwasaki N, Bavestrello G: Sponges boring into precious corals: an overview with description of a new species of Alectona (Demospongiae, Alectonidae) and a worldwide identification key for the genus. Marine Ecology-an Evolutionary Perspective 29:273-279 (2008)

108. Capozzi O, Purgato S, Verdun di Cantogno L, Grosso E, Ciccone R, Zuffardi O, Della Valle G, Rocchi M: Evolutionary and clinical neocentromeres: two faces of the same coin? Chromosoma 117:339-344 (2008)

109. Cardellicchio N, Buccolieri A, Di Leo A, Giandomenico S, Spada L: Levels of metals in reared mussels from Taranto Gulf (Ionian Sea, Southern Italy). Food Chemistry 107:890-896 (2008)

110. Cardone MF, Jiang Z, D'Addabbo P, Archidiacono N, Rocchi M, Eichler EE, Ventura M: Hominoid chromosomal rearrangements on 17q map to complex regions of segmental duplication. Genome Biol 9:R28 (2008)

111. Castrignano T, D'Antonio M, Anselmo A, Carrabino D, D'Onorio De Meo A, D'Erchia AM, Licciulli F, Mangiulli M, Mignone F, Pavesi G, Picardi E, Riva A, Rizzi R, Bonizzoni P, Pesole G: ASPicDB: a database resource for alternative splicing analysis. Bioinformatics 24:1300-4 (2008)

112. Cerrano C, Bavestrello G: Medium-term effects of die-off of rocky benthos in the Ligurian Sea. What can we learn from gorgonians? Chemistry and Ecology 24:73-82 (2008)

113. D'Ambrosio P, De Tommasi D, Ferri D, Puglisi G: A phenomenological model for healing and hysteresis in rubber-like materials. International Journal of Engineering Science 46:293-305 (2008)

114. Fattorusso E, Romano A, Taglialatela-Scafati O, Achmad MJ, Bavestrello G, Cerrano C: Lobozoanthamine, a new zoanthamine-type alkaloid from the Indonesian soft coral Lobophytum sp. Tetrahedron Letters 49:2189-2192 (2008)

115. Fattorusso E, Romano A, Taglialatela-Scafati O, Achmad MJ, Bavestrello G, Cerrano C: Xenimanadins A-D, a family of xenicane diterpenoids from the Indonesian soft coral Xenia sp. Tetrahedron 64:3141-3146 (2008)

116. Gadaleta A, Blechl AE, Nguyen SB, Cardone MF, Ventura M, Quick JS, Blanco A: Stably Expressed D Genome-derived HMW Glutenin Subunit Genes Transformed Into Different Durum Wheat Genotypes Change Dough Mixing Properties. Molecular Breeding 22:267-279 (2008)

117. Grattagliano I, Caraceni P, Calamita G, Ferri D, Gargano I, Palasciano G, Portincasa P: Severe liver steatosis correlates with nitrosative and oxidative stress in rats. European Journal of Clinical Investigation 38:523-530 (2008)

118. Guastadisegni MC, Lonoce A, Impera L, Albano F, D'Addabbo P, Caruso S, Vasta I, Panagopoulos I, Leszl A, Basso G, Rocchi M, Storlazzi CT: Bone marrow ectopic expression of a non-coding RNA in childhood T-cell acute lymphoblastic leukemia with a novel t(2;11)(q11.2;p15.1) translocation. Mol Cancer 7:80 (2008)

119. Impera L, Albano F, Lo Cunsolo C, Funes S, Iuzzolino P, Laveder F, Panagopoulos I, Rocchi M, Storlazzi CT: A novel fusion 5'AFF3/3'BCL2 originated from a t(2;18)(q11.2;q21.33) translocation in follicular lymphoma. Oncogene 27:6187-6190 (2008)

120. Impera L, Albano F, Mancini M, Aventin A, Rocchi M, Storlazzi CT: Similar mechanisms formed ring markers containing chromosome 12 pericentromeric region in two patients with therapy-related acute myeloid leukemia. Cancer Genet Cytogenet 181:131-137 (2008)

121. Locato V, Gadaleta C, De Gara L, De Pinto MC: Production of reactive species and modulation of antioxidant network in response to heat shock: a critical balance for cell fate. Plant Cell Environ 31:1606-19 (2008)

122. Logrieco A, Moretti A, Mule G, Paciolla C, Ritieni A: Advances on the toxicity of the cereal contaminant Fusarium esadepsipeptides. Cereal Research Communications 36:303-313 (2008)

123. Lomiento M, Jiang Z, D'Addabbo P, Eichler EE, Rocchi M: Evolutionary-new centromeres preferentially emerge within gene deserts. Genome Biol 9:R173 (2008)

124. Massari S, Vaccarelli G, Miccoli MC, Lefranc MP, Antonacci R, Ciccarese S: Multispecies comparative immunogenomics: TRG loci as markers in reconstructing the evolutionary pathway from ancestral to modern mammal genomes. Chromosome Res 16:1044-1044 (2008)

125. Mastrototaro F, D'Onghia G, Tursi A: Spatial and seasonal distribution of ascidians in a semi-enclosed basin of the Mediterranean Sea. Journal of the Marine Biological Association of the United Kingdom 88:1053-1061 (2008)

126. Mastrototaro F, Giove A, D'Onghia G, Tursi A, Matarrese A, Gadaleta MV: Benthic diversity of the soft bottoms in a semi-enclosed basin of the Mediterranean Sea. Journal of the Marine Biological Association of the United Kingdom 88:247-252 (2008)

127. Misceo D, Bjorgo K, Ormerod E, Ringen O, Rocchi M, van der Hagen CB, Frengen E: A de novo 6p interstitial deletion and a complex translocation involving chromosomes 2, 6, and 14 in a mildly developmentally delayed patient. Am J Med Genet A 146A:3230-3233 (2008)

128. Montemurro F, Canali S, Convertini G, Ferri D, Tittarelli F, Vitti C: Anaerobic digestates application on fodder crops: Effects on plant and soil. Agrochimica 52:297-312 (2008)

129. Monticone M, Biollo E, Maffei M, Donadini A, Romeo F, Storlazzi CT, Giaretti W, Castagnola P: Gene expression deregulation by KRAS G12D and G12V in a BRAF V600E context. Mol Cancer 7:92 (2008)

130. Moschetti R, Chlamydas S, Massimiliano Marsano R, Caizzi R: Conserved motifs and dynamic aspects of the terminal inverted repeat organization within Bari-like transposons. Mol Genet Genomics 279:451-461 (2008)

131. Paciolla C, Ippolito MP, Logrieco A, Dipierro N, Mule G, Dipierro S: A different trend of antioxidant defence responses makes tomato plants less susceptible to beauvericin than to T-2 mycotoxin phytotoxicity. Physiological and Molecular Plant Pathology 72:3-9 (2008)

132. Paradiso A, Berardino R, De Pinto MC, Sanità Di Toppi L, Storelli MM, Tommasi F, De Gara L: Increase in ascorbate-glutathione metabolism as local and precocious systemic responses induced by cadmium in durum wheat plants. Plant and Cell Physiology 49:362-374 (2008)

133. Pastore D, Mestice A, Perrone T, Gaudio F, Delia M, Albano F, Russo Rossi A, Carluiccio P, Leo M, Liso V, Specchia G: Subsets of CD34+ and early engraftment kinetics in allogeneic peripheral SCT for AML. Bone Marrow Transplant 41:977-81 (2008)

134. Pavesi G, Zambelli F, Caggese C, Pesole G: Exalign: a new method for comparative analysis of exon-intron gene structures. Nucleic Acids Res 36:e47 (2008)

135. Politou C-Y, Mytilineou C, D'Onghia G, Dokos J: Demersal faunal assemblages in the deep waters of the eastern Ionian Sea. Journal of Natural History 42:661-672 (2008)

136. Puce S, Cerrano C, Di Camillo CG, Bavestrello G: Hydroidomedusae (Cnidaria: Hydrozoa) symbiotic radiation. Journal of the Marine Biological Association of the United Kingdom 88:1715-1721 (2008)

137. Qiu H, Taudien S, Herlyn H, Schmitz J, Zhou Y, Chen G, Roberto R, Rocchi M, Platzer M, Wojnowski L: CYP3 phylogenomics: evidence for positive selection of CYP3A4 and CYP3A7. Pharmacogenet Genomics 18:53-66 (2008)

138. Scillitani G, Liquori GE, Mastrodonato M, Ferri D: Histochemical and immunohistochemical characterization of exocrine cells in the foregut of the red-eared slider turtle, Trachemys scripta (Emydidae). Archives of Histology and Cytology 71:279-290 (2008)

139. Scinto A, Bavestrello G, Boyer M, Previati M, Cerrano C: Gorgonian mortality related to a massive attack by caprellids in the Bunaken Marine Park (North Sulawesi, Indonesia). Journal of the Marine Biological Association of the United Kingdom 88:723-727 (2008)

140. Serio D, Petrocelli A, Cormaci M, Cecere E, Furnari G: First record of Osmundea oederi (Gunnerus) G. Furnari comb. nov (Rhodomelaceae, Rhodophyta) from the Mediterranean Sea. Cryptogamie Algologie 29:119-127 (2008)

141. Sharp AJ, Mefford HC, Li K, Baker C, Skinner C, Stevenson RE, Schroer RJ, Novara F, De Gregori M, Ciccone R, Broomer A, Casuga I, Wang Y, Xiao C, Barbacioru C, et al.: A recurrent 15q13.3 microdeletion syndrome associated with mental retardation and seizures. Nat Genet 40:1076-1083 (2008)

142. Silva FP, Morolli B, Storlazzi CT, Zagaria A, Impera L, Klein B, Vrieling H, Kluin-Nelemans HC, Giphart-Gassler M: ETV6 mutations and loss in AML-M0. Leukemia 22:1639-1643 (2008)

143. Stabili L, Gravili C, Tredici SM, Piraino S, Tala A, Boero F, Alifano P: Epibiotic Vibrio Luminous Bacteria Isolated from Some Hydrozoa and Bryozoa Species. Microbial Ecology 56:625-636 (2008)

144. Stabili L, Licciano M, Longo C, Corriero G, Mercurio M: Evaluation of microbiological accumulation capability of the commercial sponge Spongia officinalis var. adriatica (Schmidt) (Porifera, Demospongiae). Water Res 42:2499-2506 (2008)

145. Stanyon R, Rocchi M, Capozzi O, Roberto R, Misceo D, Ventura M, Cardone M, Bigoni F, Archidiacono N: Primate chromosome evolution: ancestral karyotypes, marker order and neocentromeres. Chromosome Res 16:17-39 (2008)

146. Storlazzi CT, Albano F, Guastadisegni MC, Impera L, Muhlematter D, Meyer-Monard S, Wuillemin W, Rocchi M, Jotterand M: Upregulation of MEL1 and FLJ42875 genes by position effect resulting from a t(1;2)(p36;p21) occurring during evolution of chronic myelomonocytic leukemia. Blood Cells Mol Dis 40:452-455 (2008)

147. Surace C, Pedeutour F, Trombetta D, Burel-Vandenbos F, Rocchi M, Storlazzi CT: Episomal amplification of MYCN in a case of medulloblastoma. Virchows Arch 452:491-497 (2008)

148. Vaccarelli G, Miccoli MC, Antonacci R, Pesole G, Ciccarese S: Genomic organization and recombinational unit duplication-driven evolution of ovine and bovine T cell receptor gamma loci. BMC Genomics 9:81 (2008)

149. Zody MC, Jiang Z, Fung H-C, Antonacci F, Hillier LW, Cardone MF, Graves TA, Kidd JM, Cheng Z, Abouelleil A, Chen L, Wallis J, Glasscock J, Wilson RK, Reily AD, Duckworth J, Ventura M, Hardy J, Warren WC, Eichler EE: Evolutionary toggling of the MAPT 17q21.31 inversion region. Nat Genet 40:1076-1083 (2008)

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150. Albano F, Anelli L, Zagaria A, Archidiacono N, Liso V, Specchia G, Rocchi M: "Home-brew" FISH assay shows higher efficiency than BCR-ABL dual color, dual fusion probe in detecting microdeletions and complex rearrangements associated with t(9;22) in chronic myeloid leukemia. Cancer Genet Cytogenet 174:121-126 (2007)

151. Annicchiarico C, Biandolino F, Cardellicchio N, Di Leo A, Giandomenico S, Prato E: Predicting toxicity in marine sediment in Taranto Gulf (Ionian Sea, Southern Italy) using Sediment Quality Guidelines and a battery bioassay. Ecotoxicology 16:239-246 (2007)

152. Antonacci R, Vaccarelli G, Di Meo GP, Piccinni B, Miccoli MC, Cribiu EP, Perucatti A, Iannuzzi L, Ciccarese S: Molecular in situ hybridization analysis of sheep and goat BAC clones identifies the transcriptional orientation of T cell receptor gamma genes on chromosome 4 in bovids. Vet Res Commun 31:977-83 (2007)

153. Baldacconi R, Nonnis-Marzano C, Gaino E, Corriero G: Sexual reproduction, larval development and release in Spongia officinalis L. (Porifera, Demospongiae) from the Apulian coast. Marine Biology 152:969-979 (2007)

154. Barucca M, Azzini F, Bavestrello G, Biscotti MA, Calcinai B, Canapa A, Cerrano C, Olmo E: The systematic position of some boring sponges (Demospongiae, Hadromerida) studied by molecular analysis. Marine Biology 151:529-535 (2007)

155. Bodega B, Cardone MF, Muller S, Neusser M, Orzan F, Rossi E, Battaglioli E, Marozzi A, Riva P, Rocchi M, Meneveri R, Ginelli E: Evolutionary genomic remodelling of the human 4q subtelomere (4q35.2). BMC Evol Biol 7:39 (2007)

156. Boero F, Bucci C, Colucci AMR, Gravili C, Stabili L: Obelia (Cnidaria, Hydrozoa, Campanulariidae): a microphagous, filter-feeding medusa. Marine Ecology-an Evolutionary Perspective 28:178-183 (2007)

157. Bosch N, Caceres M, Cardone MF, Carreras A, Ballana E, Rocchi M, Armengol L, Estivill X: Characterization and evolution of the novel gene family FAM90A in primates originated by multiple duplication and rearrangement events. Hum Mol Genet 16:2572-82 (2007)

158. Calamita G, Moreno M, Ferri D, Silvestri E, Roberti P, Schiavo L, Gena P, Svelto M, Goglia F: Triiodothyronine modulates the expression of aquaporin-8 in rat liver mitochondria. Journal of Endocrinology 192:111-120 (2007)

159. Calcinai B, Cerrano C, Bavestrello G: Three new species and one re-description of Aka. Journal of the Marine Biological Association of the United Kingdom 87:1355-1365 (2007)

160. Caputi L, Andreakis N, Mastrototaro F, Cirino P, Vassillo M, Sordino P: Cryptic speciation in a model invertebrate chordate. Proc Natl Acad Sci U S A 104:9364-9369 (2007)

161. Cardellicchio N, Buccolieri A, Giandomenico S, Lopez L, Pizzulli F, Spada L: Organic pollutants (PAHs, PCBs) in sediments from the Mar Piccolo in Taranto (Ionian Sea, Southern Italy). Marine Pollution Bulletin 55:451-458 (2007)

162. Cardone MF, Lomiento M, Teti MG, Misceo D, Roberto R, Capozzi O, D'Addabbo P, Ventura M, Rocchi M, Archidiacono N: Evolutionary history of chromosome 11 featuring four distinct centromere repositioning events in Catarrhini. Genomics 90:35-43 (2007)

163. Carreras FI, Lehmann GL, Ferri D, Tioni MF, Calamita G, Marinelli RA: Defective hepatocyte aquaporin-8 expression and reduced canalicular membrane water permeability in estrogen-induced cholestasis. Am J Physiol-Gastro Liver Physiol 292:G905-G912 (2007)

164. Cecere E, Petrocelli A, Perrone C: How the unattached form of Acanthophora nayadiformis (Rhodophyta : Ceramiales) produces storage and perennating organs. Journal of the Marine Biological Association of the United Kingdom 87:389-392 (2007)

165. Centoducati G, Tarsitano E, Bottalico A, Marvulli M, Lai OR, Crescenzo G: Monitoring of the endangered Pinna nobilis linne, 1758 in the Mar Grande of Taranto (Ionian sea, Italy). Environmental Monitoring and Assessment 131:339-347 (2007)

166. Cerrano C, Sambolino P, Azzini F, Calcinai B, Bavestrello G: Growth of the massive morph of Cliona nigricans (Schmidt 1862) (Porifera, Clionaidae) on different mineral substrata. Italian Journal of Zoology 74:13-19 (2007)

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178. Licciano M, Terlizzi A, Giangrande A, Cavallo RA, Stabili L: Filter-feeder macro invertebrates as key players in culturable bacteria biodiversity control: A case of study with Sabella spallanzanii (Polychaeta : Sabellidae). Marine Environmental Research 64:504-513 (2007)

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181. Marques-Bonet T, Sanchez-Ruiz J, Armengol L, Khaja R, Bertranpetit J, Rocchi M, Gazave E, Lopez-Bigas N, Navarro A: On the association between chromosomal rearrangements and genic evolution in humans and chimpanzees. Genome Biol 8:R230 (2007)

182. Mastrototaro F, Carlucci R, Capezzuto F, Sion L: First record of dwarf flathead Elates ransonnetii (Platycephalidae) in the Mediterranean Sea (North-Western Ionian Sea). Cybium 31:393-394 (2007)

183. Mefford HC, Clauin S, Sharp AJ, Moller RS, Ullmann R, Kapur R, Pinkel D, Cooper GM, Ventura M, Ropers HH, Tommerup N, Eichler EE, Bellanne-Chantelot C: Recurrent reciprocal genomic rearrangements of 17q12 are associated with renal disease, diabetes, and epilepsy. Am J Hum Genet 81:1057-69 (2007)

184. Mercurio M, Corriero G, Gaino E: A 3-year investigation of sexual reproduction in Geodia cydonium (Jameson 1811) (Porifera, Demospongiae) from a semi-enclosed Mediterranean bay. Marine Biology 151:1491-1500 (2007)

185. Minervini CF, Marsano RM, Casieri P, Fanti L, Caizzi R, Pimpinelli S, Rocchi M, Viggiano L: Heterochromatin protein 1 interacts with 5'UTR of transposable element ZAM in a sequence-specific fashion. Gene 393:1-10 (2007)

186. Mona S, Randi E, Tommaseo-Ponzetta M: Evolutionary history of the genus Sus inferred from cytochrome b sequences. Molecular Phylogenetics and Evolution 45:757-762 (2007)

187. Mona S, Tommaseo-Ponzetta M, Brauer S, Sudoyo H, Marzuki S, Kayser M: Patterns of Y-chromosome diversity intersect with the trans-New Guinea hypothesis. Molecular biology and evolution 24:2546-2555 (2007)

188. Montemurro F, Convertini G, Ferri D: Nitrogen application in winter wheat grown in Mediterranean conditions: Effects on nitrogen uptake, utilization efficiency, and soil nitrogen deficit. Journal of Plant Nutrition 30:1681-1703 (2007)

189. Montemurro F, Ferri D, Convertini G, Maiorana M: Treated and untreated olive waste water application on ryegrass meadow: Chemical soil properties and yielding responses. Agrochimica 51:148-159 (2007)

190. Montemurro F, Maiorana M, Convertini G, Ferri D: Effect of different N fertilisation strategies on yield, plant N status, N uptake and soil characteristics in a maize-barley rotation. Agrochimica 51:40-54 (2007)

191. Montemurro F, Maiorana M, Convertini G, Ferri D: Alternative sugar beet production using shallow tillage and municipal solid waste fertiliser. Agronomy for Sustainable Development 27:129-137 (2007)

192. Nonnis Marzano C, Baldacconi R, Fianchini A, Gravina F, Corriero G: Settlement seasonality and temporal changes in hard substrate macrozoobenthic communities of Lesina Lagoon (Apulia, Southern Adriatic Sea). Chemistry and Ecology 23:479-491 (2007)

193. Paola IM, Paciolla C, D'Aquino L, Morgana M, Tommasi F: Effect of rare earth elements on growth and antioxidant metabolism in Lemna minor L. Caryologia 60:125-128 (2007)

194. Petrosillo G, Portincasa P, Grattagliano I, Casanova G, Matera M, Ruggiero FM, Ferri D, Paradies G: Mitochondrial dysfunction in rat with nonalcoholic fatty liver. Involvement of complex I, reactive oxygen species and cardiolipin. Biochimica et Biophysica Acta - Bioenergetics 1767:1260-1267 (2007)

195. Porcelli D, Barsanti P, Pesole G, Caggese C: The nuclear OXPHOS genes in insecta: a common evolutionary origin, a common cis-regulatory motif, a common destiny for gene duplicates. BMC Evol Biol 7:215 (2007)

196. Roberto R, Capozzi O, Wilson RK, Mardis ER, Lomiento M, Tuzun E, Cheng Z, Mootnick AR, Archidiacono N, Rocchi M, Eichler EE: Molecular refinement of gibbon genome rearrangement. Genome Res 17:249-257 (2007)

197. Rossi F, Moschetti R, Caizzi R, Corradini N, Dimitri P: Cytogenetic and molecular characterization of heterochromatin gene models in Drosophila melanogaster. Genetics 175:595-607 (2007)

198. Sbisa E, Catalano D, Grillo G, Licciulli F, Turi A, Liuni S, Pesole G, De Grassi A, Caratozzolo MF, D'Erchia AM, Navarro B, Tullo A, Saccone C, Gisel A: p53FamTaG: a database resource of human p53, p63 and p73 direct target genes combining in silico prediction and microarray data. BMC Bioinformatics 8 Suppl 1:S20 (2007)

199. Scillitani G, Zizza S, Liquori GE, Ferri D: Lectin histochemistry of gastrointestinal glycoconjugates in the greater horseshoe bat, Rhinolophus ferrumequinum (Schreber, 1774). Acta Histochemica 109:347-357 (2007)

200. Scinto A, Benvenuto C, Cerrano C, Mori M: Seasonal cycle of Jassa marmorata Holmes, 1903 (Amphipoda) in the Ligurian Sea (Mediterranean, Italy). Journal of Crustacean Biology 27:212-216 (2007)

201. Steindler L, Schuster S, Ilan M, Avni A, Cerrano C, Beer S: Differential gene expression in a marine sponge in relation to its symbiotic state. Marine Biotechnology 9:543-549 (2007)

202. Storlazzi CT, Albano F, Dencic-Fekete M, Djordjevic V, Rocchi M: Late-appearing pseudocentric fission event during chronic myeloid leukemia progression. Cancer Genet Cytogenet 174:61-67 (2007)

203. Storlazzi CT, Albano F, Lo Cunsolo C, Doglioni C, Guastadisegni MC, Impera L, Lonoce A, Funes S, Macri E, Iuzzolino P, Panagopoulos I, Specchia G, Rocchi M: Upregulation of the SOX5 by promoter swapping with the P2RY8 gene in primary splenic follicular lymphoma. Leukemia 17:2221-2225 (2007)

204. Vacca RA, Valenti D, Bobba A, de Pinto MC, Merafina RS, De Gara L, Passarella S, Marra E: Proteasome function is required for activation of programmed cell death in heat shocked tobacco Bright-Yellow 2 cells. FEBS Letters 581:917-22 (2007)

205. Valente L, Tiranti V, Marsano RM, Malfatti E, Fernandez-Vizarra E, Donnini C, Mereghetti P, De Gioia L, Burlina A, Castellan C, Comi GP, Savasta S, Ferrero I, Zeviani M: Infantile encephalopathy and defective mitochondrial DNA translation in patients with mutations of mitochondrial elongation factors EFG1 and EFTu. Am J Hum Genet 80:44-58 (2007)

206. Valenti D, Vacca RA, de Pinto MC, De Gara L, Marra E, Passarella S: In the early phase of programmed cell death in Tobacco Bright Yellow 2 cells the mitochondrial adenine nucleotide translocator, adenylate kinase and nucleoside diphosphate kinase are impaired in a reactive oxygen species-dependent manner. Biochim Biophys Acta 1767:66-78 (2007)

207. Valisano L, Bavestrello G, Giovine M, Arillo A, Cerrano C: Effect of iron and dissolved silica on primmorphs of Petrosia ficiformis (Poiret, 1789). Chemistry and Ecology 23:233-241 (2007)

208. Ventura M, Antonacci F, Cardone MF, Stanyon R, D'Addabbo P, Cellamare A, Sprague LJ, Eichler EE, Archidiacono N, Rocchi M: Evolutionary formation of new centromeres in macaque. Science 316:243-246 (2007)

2006

209. Accetturo M, Santamaria M, Lascaro D, Rubino F, Achilli A, Torroni A, Tommaseo-Ponzetta M, Attimonelli M: Human mtDNA site-specific variability values can act as haplogroup markers. Hum Mutat 27:965-974 (2006)

210. Albano F, Specchia G, Anelli L, Zagaria A, Archidiacono N, Liso V, Rocchi M: Molecular cytogenetic findings supporting the evidence of a biclonal origin in acute myeloid leukemia. Ann Hematol 85:129-131 (2006)

211. Amato E, Alcaro L, Corsi I, Della Torre C, Farchi C, Focardi S, Marino G, Tursi A: An integrated ecotoxicological approach to assess the effects of pollutants released by unexploded chemical ordnance dumped in the southern Adriatic (Mediterranean Sea). Marine Biology 149:17-23 (2006)

212. Basile G, Cerrano C, Zocchi E: ADP-ribosyl cyclase and abscisic acid are involved in the seasonal growth and in post-traumatic tissue regeneration of Mediterranean sponges. Molecular Medicine 12:S4-S4 (2006)

213. Bavestrello G, Puce S, Cerrano C, Zocchi E, Boero F: The problem of seasonality of benthic hydroids in temperate waters. Chemistry and Ecology 22:197-205 (2006)

214. Blasi P, Palmerio F, Aiello A, Rocchi M, Malaspina P, Novelletto A: SSADH Variation in Primates: Intra- and Interspecific Data on a Gene with a Potential Role in Human Cognitive Functions. J Mol Evol 63:54-68 (2006)

215. Bodega B, Cardone MF, Rocchi M, Meneveri R, Marozzi A, Ginelli E: The boundary of macaque rDNA is constituted by low-copy sequences conserved during evolution. Genomics 88:564-571 (2006)

216. Buccolieri A, Buccolieri G, Cardellicchio N, Dell'Atti A: Heavy metals in PM10 sampled in the urban area of Campi Salentina (Apulia, southern Italy). Annali Di Chimica 96:147-157 (2006)

217. Buccolieri A, Buccolieri G, Cardellicchio N, Dell'Atti A, Di Leo A, Maci A: Heavy metals in marine sediments of Taranto Gulf (Ionian Sea, Southern Italy). Marine Chemistry 99:227-235 (2006)

218. Calace N, Cardellicchio N, Petronio BM, Pietrantonio M, Pietroletti M: Sedimentary humic substances in the northern Adriatic sea (Mediterranean sea). Marine Environmental Research 61:40-58 (2006)

219. Calamita G, Gena P, Meleleo D, Ferri D, Svelto M: Water permeability of rat liver mitochondria: A biophysical study. Biochimica et Biophysica Acta - Biomembranes 1758:1018-1024 (2006)

220. Calcinai B, Azzini F, Bavestrello G, Cerrano C, Pansini M, Thung DC: Boring sponges from Ha Long Bay, Tonkin Gulf, Vietnam. Zoological Studies 45:201-212 (2006)

221. Calcinai B, Cerrano C, Totti C, Romagnoli T, Bavestrello G: Symbiosis of Mycale (Mycale) vansoesti sp nov (Porifera, Demospongiae) with a coralline alga from North Sulawesi (Indonesia). Invertebrate Biology 125:195-204 (2006)

222. Carbone L, Nergadze SG, Magnani E, Misceo D, Francesca Cardone M, Roberto R, Bertoni L, Attolini C, Francesca Piras M, de Jong P, Raudsepp T, Chowdhary BP, Guerin G, Archidiacono N, Rocchi M, Giulotto E: Evolutionary movement of centromeres in horse, donkey, and zebra. Genomics 87:777-782 (2006)

223. Cardellicchio N, Buccolieri A, Di Leo A, Spada L: Heavy metals in marine sediments from the Mar Piccolo of Taranto (Ionian Sea, Southern Italy). Annali Di Chimica 96:727-741 (2006)

224. Cardellicchio N, Buccolieri A, Giandomenio S, Lerario VL, Lopez L, Pizzulli F: Distribution and occurence of polycyclic aromatic hydrocarbons (PAHs) in sediments from the Mar Grande and Gulf of Taranto (Ionian Sea, Southern Italy). Annali Di Chimica 96:51-64 (2006)

225. Cardellicchio N, Di Leo A, Giandomenico S, Santoro S: Optimization of microwave digestion for mercury determination in marine biological samples by cold vapour atomic absorption spectrometry. Annali Di Chimica 96:159-165 (2006)

226. Cardone MF, Alonso A, Pazienza M, Ventura M, Montemurro G, Carbone L, de Jong PJ, Stanyon R, D'Addabbo P, Archidiacono N, She X, Eichler EE, Warburton PE, Rocchi M: Independent centromere formation in a capricious, gene-free domain of chromosome 13q21 in Old World monkeys and pigs. Genome Biol 7:R91 (2006)

227. Carlucci R, D'Onghia G, Sion L, Maiorano P, Tursi A: Selectivity parameters and size at first maturity in deep-water shrimps, Aristaeomorpha foliacea (Risso, 1827) and Aristeus antennatus (Risso, 1816), from the north-western ionian sea (Mediterranean Sea). Hydrobiologia 557:145-154 (2006)

228. Caroppo C, Stabili L, Aresta M, Corinaldesi C, Danovaro R: Impact of heavy metals and PCBs on marine picoplankton. Environmental Toxicology 21:541-551 (2006)

229. Cerrano C, Azzini F, Bavestrello G, Calcinal B, Pansini M, Sarti M, Thung D: Marine lakes of karst islands in Ha Long Bay (Vietnam). Chemistry and Ecology 22:489-500 (2006)

230. Cerrano C, Calcinai B, Bertolino M, Valisano L, Bavestrello G: Epibionts of the scallop Adamussium colbecki (Smith, 1902) in the Ross Sea, Antarctica. Chemistry and Ecology 22:235-244 (2006)

231. Cerrano C, Totti C, Sponga F, Bavestrello G: Summer disease in Parazoanthus axinellae (Schmidt, 1862) (Cnidaria, Zoanthidea). Italian Journal of Zoology 73:355-361 (2006)

232. Ciccone R, Mattina T, Giorda R, Bonaglia MC, Rocchi M, Pramparo T, Zuffardi O: Inversion polymorphisms and non-contiguous terminal deletions: the cause and the (unpredicted) effect of our genome architecture. J Med Genet 43:e19 (2006)

233. Corriero G, Marzano CN: A new species of Cliona (Demospongiae, Hadromerida) from the Mediterranean Sea. Italian Journal of Zoology 73:191-195 (2006)

234. D'Elia D, Catalano D, Licciulli F, Turi A, Tripoli G, Porcelli D, Saccone C, Caggese C: The MitoDrome database annotates and compares the OXPHOS nuclear genes of Drosophila melanogaster, Drosophila pseudoobscura and Anopheles gambiae. Mitochondrion 6:252-7 (2006)

235. D'Erchia AM, Tullo A, Lefkimmiatis K, Saccone C, SbisaÃÄ E: The fatty acid synthase gene is a conserved p53 family target from worm to human. Cell Cycle 5:750-758 (2006)

236. D'Onghia G, Sion L, Maiorano P, Mytilineou C, Dalessandro S, Carlucci R, Desantis S: Population biology and life strategies of Chlorophthalmus agassizii Bonaparte, 1840 (Pisces: Osteichthyes) in the Mediterranean Sea. Marine Biology 149:435-446 (2006)

237. de Pinto MC, Paradiso A, Leonetti P, De Gara L: Hydrogen peroxide, nitric oxide and cytosolic ascorbate peroxidase at the crossroad between defence and cell death. Plant J 48:784-95 (2006)

238. Desantis S, Labate M, Labate GM, Maiorano P, Tursi A: An ultrastructural and histochemical study of the germinal cells contained in hemispermatophores of males of the Aristaeomorpha foliacea (Risso, 1827). Hydrobiologia 557:41-49 (2006)

239. Ferrara GB, Murgia B, Parodi AM, Valisano L, Cerrano C, Palmisano G, Bavestrello G, Sara M: The assessment of DNA from marine organisms via a modified salting-out protocol. Cellular & Molecular Biology Letters 11:155-160 (2006)

240. Gaino E, Liaci LS, Sciscioli M, Corriero G: Investigation of the budding process in Tethya citrina and Tethya aurantium (Porifera, Demospongiae). Zoomorphology 125:87-97 (2006)

241. Gaino E, Sciscioli M, Lepore E, Rebora M, Corriero G: Association of the sponge Tethya orphei (Porifera, Demospongiae) with filamentous cyanobacteria. Invertebrate Biology 125:281-287 (2006)

242. Johnson ME, Program NCS, Cheng Z, Morrison VA, Scherer S, Ventura M, Gibbs RA, Green ED, Eichler EE: Eukaryotic transposable elements and genome evolution special feature: recurrent duplication-driven transposition of DNA during hominoid evolution. Proc Natl Acad Sci U S A 103:17626-17631 (2006)

243. Lepore E, Sciscioli M, Mastrodonato M, Gherardi M, Giangrande A, Musco L: Sperm ultra-structure and spermiogenesis in Syllis krohni (Polychaeta: Syllidae), with some observations on its reproductive biology. Scientia Marina 70:585-592 (2006)

244. Mastrodonato M, Gherardi M, Todisco G, Sciscioli M, Lepore E: The epidermis of Timarete filigera (Polychaeta, Cirratulidae): Histochemical and ultrastructural analysis of the gland cells. Tissue and Cell 38:279-284 (2006)

245. Mastrototaro F, Brunetti R: The non-indigenous ascidian Distaplia bermudensis in the Mediterranean: Comparison with the native species Distaplia magnilarva and Distaplia lucillae sp. nov. Journal of the Marine Biological Association of the United Kingdom 86:181-185 (2006)

246. Mercurio M, Corriero G, Gaino E: Sessile and non-sessile morphs of Geodia cydonium (Jameson) (Porifera, Demospongiae) in two semi-enclosed Mediterranean bays. Marine Biology 148:489-501 (2006)

247. Montemurro F, Maiorana M, Convertini G, Ferri D: Compost organic amendments in fodder crops: Effects on yield, nitrogen utilization and soil characteristics. Compost Science and Utilization 14:114-123 (2006)

248. Montemurro F, Maiorana M, Ferri D, Convertini G: Nitrogen indicators, uptake and utilization efficiency in a maize and barley rotation cropped at different levels and sources of N fertilization. Field Crops Research 99:114-124 (2006)

249. Mytilineou C, Kavadas S, Politou C, Kapiris K, Tursi A, Maiorano P: Catch composition on red shrimps' (Aristaeomorpha foliacea and Aristeus antennatus) grounds in the eastern ionian sea. Hydrobiologia 557:155-160 (2006)

250. Pazzani C, Scrascia M, Dionisi AM, Maimone F, Luzzi I: Molecular epidemiology and origin of cholera reemergence in Italy and Albania in the 1990s. Res Microbiol 6:508-512 (2006)

251. Perrone C, Cecere E, Furnari G: Growth pattern assessment in the genus Acanthophora (Rhodophyta, Ceramiales). Phycologia 45:37-43 (2006)

252. Perrone C, Felicini GP, Bottalico A: The prostrate system of the Gelidiales: diagnostic and taxonomic importance. Botanica Marina 49:23-33 (2006)

253. Prato E, Di Leo A, Biandolino F, Cardellicchio N: Sediment toxicity tests using two species of marine amphipods: Gammarus aequicauda and Corophium insidiosum. Bulletin of Environmental Contamination and Toxicology 76:629-636 (2006)

254. Puce S, Cerrano C, Di Camillo C, Bavestrello G, Marques AC: Eudendrium (Cnidaria : Hydrozoa) from Bunaken Marine Park, Sulawesi Sea, Indonesia. Zoological Studies 45:616-625 (2006)

255. Rocchi M, Archidiacono N, Stanyon R: Ancestral genomes reconstruction: An integrated, multi-disciplinary approach is needed. Genome Res 16:1441–1444 (2006)

256. Sbisa E, Mastropasqua G, Lefkimmiatis K, Caratozzolo MF, D'Erchia AM, Tullo A: Connecting p63 to cellular proliferation: The example of the adenosine deaminase target gene. Cell Cycle 5:205-212 (2006)

257. Schejter L, Calcinai B, Cerrano C, Bertolino M, Pansini M, Giberto D, Bremec C: Porifera from the argentine sea: Diversity in Patagonian scallop beds. Italian Journal of Zoology 73:373-385 (2006)

258. Scrascia M, Maimone F, Mohamud KA, Materu SF, Grimont F, Grimont PAD, Pazzani C: Clonal Relationship among Vibrio cholerae O1 El Tor Strains Causing the Largest Cholera Epidemic in Kenya in the Late 1990s. J Clin Microbiol:3401-3404 (2006)

259. She X, Liu G, Ventura M, Zhao S, Misceo D, Roberto R, Cardone MF, Rocchi M, Green ED, Archidiacono N, Eichler EE: A preliminary comparative analysis of primate segmental duplications shows elevated substitution rates and a great-ape expansion of intrachromosomal duplications. Genome Res 16:576-583 (2006)

260. Spinazzola A, Viscomi C, Fernandez-Vizarra E, Carrara F, D'Adamo P, Calvo S, Marsano RM, Donnini C, Weiher H, Strisciuglio P, Parini R, Sarzi E, Chan A, DiMauro S, Rotig A, Gasparini P, Ferrero I, Mootha VK, Tiranti V, Zeviani M: MPV17 encodes an inner mitochondrial membrane protein and is mutated in infantile hepatic mitochondrial DNA depletion. Nat Genet 38:570-5 (2006)

261. Stabili L, Caroppo C, Cavallo RA: Monitoring of a coastal Mediterranean Area: Culturable bacteria, phytoplankton, environmental factors and their relationships in the Southern Adriatic Sea. Environmental Monitoring and Assessment 121:303-325 (2006)

262. Stabili L, Gravili C, Piraino S, Boero F, Alifano P: Vibrio harveyi Associated with Aglaophenia octodonta (Hydrozoa, Cnidaria). Microbial Ecology 52:603-608 (2006)

263. Stabili L, Licciano M, Giangrande A, Fanelli G, Cavallo RA: Sabella spallanzanii filter-feeding on bacterial community: Ecological implications and applications. Marine Environmental Research 61:74-92 (2006)

264. Stabili L, Licciano M, Giangrande A, Longo C, Mercurio M, Marzano CN, Corriero G: Filtering activity of Spongia officinalis var. adriatica (Schmidt) (Porifera, Demospongiae) on bacterioplankton: Implications for bioremediation of polluted seawater. Water Res 40:3083-3090 (2006)

265. Storlazzi C, Brekke H, Mandahl N, Brosjo O, Smeland S, Lothe R, Mertens F: Identification of a novel amplicon at distal 17q containing the BIRC5/SURVIVIN gene in malignant peripheral nerve sheath tumours. J Pathol 209:492-500 (2006)

266. Storlazzi CT, Albano F, Locunsolo C, Lonoce A, Funes S, Guastadisegni MC, Cimarosto L, Impera L, D'Addabbo P, Panagopoulos I, Specchia G, Rocchi M: t(3;12)(q26;q14) in polycythemia vera is associated with upregulation of the HMGA2 gene. Leukemia 20:2190-2192 (2006)

267. Todoric-Zivanovic B, Marisavljevic D, Surace C, Cemerikic V, Markovic O, Krtolica K, Tatomirovic Z, Cikota B, Magic Z, Rocchi M: A Ph-negative chronic myeloid leukemia with a complex BCR/ABL rearrangement and a t(6;9)(p21;q34.1). Cancer Genet Cytogenet 166:180-185 (2006)

268. Tommasi F, Paciolla C, de Pinto MC, De Gara L: Effects of storage temperature on viability, germination and antioxidant metabolism in Ginkgo biloba L. seeds. Plant Physiol Biochem 44:359-68 (2006)

269. Trubia M, Albano F, Cavazzini F, Cambrin GR, Quarta G, Fabbiano F, Ciambelli F, Magro D, M. HJ, Mancini M, Diverio D, Pelicci PG, L. CF, Mecucci C, Specchia G, Rocchi M, Liso V, Cuneo A: Characterization of a recurrent translocation t(2;3)(p15–22;q26) occurring in acute myeloid leukaemia. Leukemia 20:48-54 (2006)

270. Valisano L, Bavestrello G, Giovine M, Arillo A, Cerrano C: Seasonal production of primmorphs from the marine sponge Petrosia ficiformis (Poiret, 1789) and new culturing approaches. Journal of Experimental Marine Biology and Ecology 337:171-177 (2006)

271. Valisano L, Bavestrello G, Giovine M, Cerrano C: Primmorphs formation dynamics: a screening among Mediterranean sponges. Marine Biology 149:1037-1046 (2006)

272. Van Erpecum KJ, Wang DQH, Moschetta A, Ferri D, Svelto M, Portincasa P, Hendrickx JJ, Schipper M, Calamita G: Gallbladder histopathology during murine gallstone formation: Relation to motility and concentrating function. Journal of Lipid Research 47:32-41 (2006)

273. Van Roy N, Vandesompele J, Menten B, Nilsson H, De Smet E, Rocchi M, De Paepe A, Pahlman S, Speleman F: Translocation-excision-deletion-amplification mechanism leading to nonsyntenic coamplification of MYC and ATBF1. Genes Chromosomes Cancer 45:107-117 (2006)

274. Wilkie IC, Parma L, Bonasoro F, Bavestrello G, Cerrano C, Carnevali MDC: Mechanical adaptability of a sponge extracellular matrix: evidence for cellular control of mesohyl stiffness in Chondrosia reniformis Nardo. Journal of Experimental Biology 209:4436-4443 (2006)

275. Yakimov MM, Cappello S, Crisafi E, Tursi A, Savini A, Corselli C, Scarfi S, Giuliano L: Phylogenetic survey of metabolically active microbial communities associated with the deep-sea coral Lophelia pertusa from the Apulian plateau, Central Mediterranean Sea. Deep-Sea Research Part I-Oceanographic Research Papers 53:62-75 (2006)

276. Zagaria A, Anelli L, Albano F, Vicari L, Schiavone EM, Annunziata M, Pane F, Liso V, Rocchi M, Specchia G: Molecular cytogenetic characterization of deletions on der(9) in chronic myelocytic leukemia. Cancer Genet Cytogenet 167:97-102 (2006)

2005

277. Anelli L, Albano F, Zagaria A, Liso A, Cuneo A, Mancini M, Liso V, Rocchi M, Specchia G: Pericentric chromosome 8 inversion associated with the 5'RUNX1/3'CBFA2T1 gene in acute myeloid leukemia cases. Ann Hematol 84:245-9 (2005)

278. Antonacci R, Lanave C, Del Faro L, Vaccarelli G, Ciccarese S, Massari S: Artiodactyl emergence is accompanied by the birth of an extensive pool of diverse germline TRDV1 genes. Immunogenetics 57:254-266 (2005)

279. Attimonelli M, Accetturo M, Santamaria M, Lascaro D, Scioscia G, Pappada G, Russo L, Zanchetta L, Tommaseo-Ponzetta M: HmtDB, a human mitochondrial genomic resource based on variability studies supporting population genetics and biomedical research. BMC Bioinformatics 6(2005)

280. Buccolieri A, Buccolieri G, Cardellicchio N, Dell'Atti A, Di Leo A, Maci A, Petronio BM: Distribution and speciation of metals in surface sediments of Taranto Gulf(Ionian Sea, southern Italy) (vol 93, pg 469, 2003). Annali Di Chimica 95:115-115 (2005)

281. Buccolieri A, Buccolieri G, Cardellicchio N, Dell'Atti A, Florio ET: PM-10 and heavy metals in particulate matter of the province of Lecce (Apulia, southern Italy). Annali Di Chimica 95:15-25 (2005)

282. Buccolieri A, Buccolieri G, Cardellicchio N, Maci A: Underground waters quality in the province of Lecce (Apulia, Southern Italy). Annali Di Chimica 95:227-237 (2005)

283. Calace N, Ciardullo S, Petronio BM, Pietrantonio M, Abbondanzi F, Campisi T, Cardellicchio N: Influence of chemical parameters (heavy metals, organic matter, sulphur and nitrogen) on toxicity of sediments from the Mar Piccolo (Taranto, Ionian Sea, Italy). Microchemical Journal 79:243-248 (2005)

284. Calamita G, Ferri D, Bazzini C, Mazzone A, BottaÃÄ G, Liquori GE, Paulmichl M, Portincasa P, Meyer G, Svelto M: Expression and subcellular localization of the AQP8 and AQP1 water channels in the mouse gall-bladder epithelium. Biology of the Cell 97:415-423 (2005)

285. Calamita G, Ferri D, Gena P, Liquori GE, Cavalier A, Thomas D, Svelto M: The inner mitochondrial membrane has aquaporin-8 water channels and is highly permeable to water. Journal of Biological Chemistry 280:17149-17153 (2005)

286. Calamita G, Ferri D, Gena P, Liquori GE, Marinelli RA, Meyer G, Portincasa P, Svelto M: Water transport into bile and role in bile formation. Current Drug Targets: Immune, Endocrine and Metabolic Disorders 5:137-142 (2005)

287. Calcinai B, Bavestrello G, Cerrano C: Excavating sponge species from the Indo-Pacific Ocean. Zoological Studies 44:5-18 (2005)

288. Cerrano C, Arillo A, Azzini F, Calcinai B, Castellano L, Muti C, Valisano L, Zega G, Bavestrello G: Gorgonian population recovery after a mass mortality event. Aquatic Conservation-Marine and Freshwater Ecosystems 15:147-157 (2005)

289. Cheng Z, Ventura M, She X, Khaitovich P, Graves T, Osoegawa K, Church D, DeJong P, Wilson RK, Paabo S, Rocchi M, Eichler EE: A genome-wide comparison of recent chimpanzee and human segmental duplications. Nature 437:88-93 (2005)

290. Ciccone R, Giorda R, Gregato G, Guerrini R, Giglio S, Carrozzo R, Bonaglia MC, Priolo E, Lagana C, Tenconi R, Rocchi M, Pramparo T, Zuffardi O, Rossi E: Reciprocal translocations: a trap for cytogenetists? Hum Genet 117:571-582 (2005)

291. Consortium, ..., Rocchi M, Archidiacono N, Ventura M, ... Initial sequence of the chimpanzee genome and comparison with the human genome. Nature 437:69-87 (2005)

292. D'Onghia G, Capezzuto F, Mytilineou C, Maiorano P, Kapiris K, Carlucci R, Sion L, Tursi A: Comparison of the population structure and dynamics of Aristeus antennatus (Risso, 1816) between exploited and unexploited areas in the Mediterranean Sea. Fisheries Research 76:22-38 (2005)

293. De Grassi A, Caggese C, D'Elia D, Lanave C, Pesole G, Saccone C: Evolution of nuclearly encoded mitochondrial genes in Metazoa. Gene 354:181-188 (2005)

294. De Gregori M, Pramparo T, Memo L, Gimelli G, Messa J, Rocchi M, Patricelli MG, Ciccone R, Giorda R, Zuffardi O: Direct duplication 12p11.21-p13.31 mediated by segmental duplications: a new recurrent rearrangement? Hum Genet 18:207-213 (2005)

295. Dipierro N, Mondelli D, Paciolla C, Brunetti G, Dipierro S: Changes in the ascorbate system in the response of pumpkin (Cucurbita pepo L.) roots to aluminium stress. Journal of Plant Physiology 162:529-536 (2005)

296. Ferri D, Moro L, Mastrodonato M, Capuano F, Marra E, Liquori GE, Greco M: Ultrastructural zonal heterogeneity of hepatocytes and mitochondria within the hepatic acinus during liver regeneration after partial hepatectomy. Biology of the Cell 97:277-288 (2005)

297. Gherardi M, Mastrodonato M, Sion L, Musco L, Lepore E, Sciscioli M, Giangrande A: Reproduction activity of Exogone naidina (Polychaeta: Exogoninae) in a population from the Apulian coast (Adriatic Sea). Marine Biology 147:197-203 (2005)

298. Giambra V, Fruscalzo A, Giufre M, Martinez-Labarga C, Favaro M, Rocchi M, Frezza D: Evolution of human IgH3'EC duplicated structures: both enhancers HS1,2 are polymorphic with variation of transcription factor's consensus sites. Gene 346:105-114 (2005)

299. Holm LM, Jahn TP, Muller ALB, Schjoerring JK, Ferri D, Klaerke DA, Zeuthen T: NH3 and NH4 + permeability in aquaporin-expressing Xenopus oocytes. Pflugers Archiv European Journal of Physiology 450:415-428 (2005)

300. Licciano M, Stabili L, Giangrande A: Clearance rates of Sabella spallanzanii and Branchiomma luctuosum (Annelida : Polychaeta) on a pure culture of Vibrio alginolyticus. Water Res 39:4375-4384 (2005)

301. Liquori GE, Zizza S, Mastrodonato M, Scillitani G, Calamita G, Ferri D: Pepsinogen and H,K-ATPase mediate acid secretion in gastric glands of Triturus carnifex (Amphibia, Caudata). Acta Histochemica 107:133-141 (2005)

302. Locke DP, Jiang Z, Pertz LM, Misceo D, Archidiacono N, Eichler EE: Molecular evolution of the human chromosome 15 pericentromeric region. Cytogenet Genome Res 108:73-82 (2005)

303. Longo C, Mastrototaro F, Corriero G: Sponge fauna associated with a Mediterranean deep-sea coral bank. Journal of the Marine Biological Association of the United Kingdom 85:1341-1352 (2005)

304. Marsano RM, Caizzi R: A genome-wide screening of BEL-Pao like retrotransposons in Anopheles gambiae by the LTR_STRUC program. Gene 357:115-21 (2005)

305. Marsano RM, Caizzi R, Moschetti R, Junakovic N: Evidence for a functional interaction between the Bari1 transposable element and the cytochrome P450 cyp12a4 gene in Drosophila melanogaster. Gene 357:122-8 (2005)

306. Marzella R, Carrozzo C, Chiarappa P, Miolla V, Rocchi M: Panels of somatic cell hybrids specific for chimpanzee, gorilla, orangutan, and baboon. Cytogenet Genome Res 108:223-228 (2005)

307. Mastrodonato M, Lepore E, Gherardi M, Zizza S, Sciscioli M, Ferri D: Histochemical and ultrastructural analysis of the epidermal gland cells of Branchiomma luctuosum (Polychaeta, Sabellidae). Invertebrate Biology 124:303-309 (2005)

308. Miccoli MC, Vaccarelli G, Lanave C, Cribiu EP, Ciccarese S: Comparative analyses of sheep and human TRG joining regions: Evolution of J genes in Bovidae is driven by sequence conservation in their promoters for germline transcription. Gene 355:67-78 (2005)

309. Minervini C, Marsano RM, Casieri P, Fanti L, Caizzi R, Pimpinelli S, Rocchi M, Viggiano L: HP1 and retrotransposons: liasons dangerous. Chromosome Res 13:120-120 (2005)

310. Misceo D, Cardone MF, Carbone L, D'Addabbo P, de Jong PJ, Rocchi M, Archidiacono N: Evolutionary history of chromosome 20. Mol Biol Evol 22:360-366 (2005)

311. Montemurro F, Convertini G, Ferri D, Maiorana M: MSW compost application on tomato crops in Mediterranean conditions: Effects on agronomic performance and nitrogen utilization. Compost Science and Utilization 13:234-242 (2005)

312. Mytilineou C, Politou CY, Papaconstantinou C, Kavadas S, D'Onghia G, Sion L: Deep-water fish fauna in the Eastern Ionian Sea. Belgian Journal of Zoology 135:229-233 (2005)

313. Perrone C, Cecere E, Delle Foglie CI: Developmental morphology of Acanthophora nayadiformis (Rhodophyta, Ceramiales): Sympodial growth and propagule germination. Plant Biosystems 139:189-197 (2005)

314. Pramparo T, Grosso S, Messa J, Zatterale A, Bonaglia MC, Chessa L, Balestri P, Rocchi M, Zuffardi O, Giorda R: Loss-of-function mutation of the AF9/MLLT3 gene in a girl with neuromotor development delay, cerebellar ataxia, and epilepsy. Hum Genet 118:76-81 (2005)

315. Puce S, Calcinai B, Bavestrello G, Cerrano C, Gravili C, Boero F: Hydrozoa (Cnidaria) symbiotic with Porifera: a review. Marine Ecology-an Evolutionary Perspective 26:73-81 (2005)

316. Puce S, Cerrano C, Marques AC, Bavestrello G: Eudendrium klausi (Cnidaria, Hydrozoa), a new species of hydroid from Belize. Journal of the Marine Biological Association of the United Kingdom 85:291-305 (2005)

317. Sardiello M, Tripoli G, Romito A, Minervini C, Viggiano L, Caggese C, Pesole G: Energy biogenesis: one key for coordinating two genomes. Trends Genet 21:12-6 (2005)

318. Schueler MG, Dunn JM, Bird CP, Ross MT, Viggiano L, Rocchi M, Willard HF, Green ED: Progressive proximal expansion of the primate X chromosome centromere. Proc Natl Acad Sci U S A 102:10563-10568 (2005)

319. Scillitani G, Zizza S, Liquori GE, Ferri D: Histochemical and immunohistochemical evidence for a gradient in gastric juice production in the greater horseshoe bat, Rhinolophus ferrumequinum (Schreber, 1774). Acta Chiropterologica 7:301-308 (2005)

320. Specchia G, Albano F, Anelli L, Zagaria A, Liso A, Pannunzio A, Archidiacono N, Liso V, Rocchi M: Molecular cytogenetic study of instability at 1q21 approximately q32 in adult acute lymphoblastic leukemia. Cancer Genet Cytogenet 156:54-58 (2005)

321. Stabili L, Acquaviva MI, Cavallo RA: Mytilus galloprovincialis filter feeding on the bacterial community in a Mediterranean coastal area (Northern Ionian Sea, Italy). Water Res 39:469-477 (2005)

322. Storlazzi CT, Von Steyern FV, Domanski HA, Mandahl N, Mertens F: Biallelic somatic inactivation of the NF1 gene through chromosomal translocations in a sporadic neurofibroma. Int J Cancer 117:1055-1057 (2005)

323. Storlazzi CT, Wozniak A, Panagopoulos I, Sciot R, Mandahl N, Mertens F, Debiec-Rychter M: Rearrangement of the COL12A1 and COL4A5 genes in subungual exostosis: molecular cytogenetic delineation of the tumor-specific translocationt(X;6)(q13-14;q22). Int J Cancer 18:1972-1976 (2005)

324. Taviani M, Remia A, Corselli C, Freiwald A, Malinverno E, Mastrototaro F, Savini A, Tursi A: First geo-marine survey of living cold-water Lophelia reefs in the Ionian Sea (Mediterranean basin). Facies 50:409-417 (2005)

325. Totti C, Calcinai B, Cerrano C, Di Camillo C, Romagnoli T, Bavestrello G: Diatom assemblages associated with Sphaerotylus antarcticus (Porifera : Demospongiae). Journal of the Marine Biological Association of the United Kingdom 85:795-800 (2005)

326. Tripoli G, D'Elia D, Barsanti P, Caggese C: Comparison of the oxidative phosphorylation (OXPHOS) nuclear genes in the genomes of Drosophila melanogaster, Drosophila pseudoobscura and Anopheles gambiae. Genome Biol 6:R11 (2005)

327. Vaccarelli G, Miccoli MC, Lanave C, Massari S, Cribiu EP, Ciccarese S: Genomic organization of the sheep TRG1@ locus and comparative analyses of Bovidae and human variable genes. Gene 357:103-114 (2005)

328. Wieser R, Fritz B, Ullmann R, Muller I, Galhuber M, Storlazzi CT, Ramaswamy A, Christiansen H, Shimizu N, Rehder H: Novel rearrangement of chromosome band 22q11.2 causing 22q11 microdeletion syndrome-like phenotype and rhabdoid tumor of the kidney. Hum Mutat 26:78-83 (2005)

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