NM_001754.3 ctttgggcctcataaacaaccacagaaccacaagttgggtagcctggcag tgtcagaagtctgaacccagcatagtggtcagcaggcaggacgaatcaca ctgaatgcaaaccacagggtttcgcagcgtggtgagcatcaccaacccac agccaaggcggcgctggctttttttttttttttaatctttaacaatttga atatttgtttttacaaaggtgcattttttaatagggcttggggagtccca gaggtatccagcagaggggagaagaaagagagatgtagggctagaggggt gaggctgaaacagtgacctgtcttggttttcgctccgaaggtaaaagaaa tcattgagtcccccgccttcagaagagggtgcattttcaggaggaagcga tggcttcagacagcatatttgagtcatttccttcgtacccacagtgcttc atgagagaatgcatacttggaatgaatccttctagagacgtccacgatgc cagcacgagccgccgcttcacgccgccttccaccgcgctgagcccaggca agatgagcgaggcgttgccgctgggcgccccggacgccggcgctgccctg gccggcaagctgaggagcggcgaccgcagcatggtggaggtgctggccga ccacccgggcgagctggtgcgcaccgacagccccaacttcctctgctccg tgctgcctacgcactggcgctgcaacaagaccctgcccatcgctttcaag gtggtggccctaggggatgttccagatggcactctggtcactgtgatggc tggcaatgatgaaaactactcggctgagctgagaaatgctaccgcagcca tgaagaaccaggttgcaagatttaatgacctcaggtttgtcggtcgaagt ggaagagggaaaagcttcactctgaccatcactgtcttcacaaacccacc gcaagtcgccacctaccacagagccatcaaaatcacagtggatgggcccc gagaacctcgaagacatcggcagaaactagatgatcagaccaagcccggg agcttgtccttttccgagcggctcagtgaactggagcagctgcggcgcac agccatgagggtcagcccacaccacccagcccccacgcccaaccctcgtg cctccctgaaccactccactgcctttaaccctcagcctcagagtcagatg caggatacaaggcagatccaaccatccccaccgtggtcctacgatcagtc ctaccaatacctgggatccattgcctctccttctgtgcacccagcaacgc ccatttcacctggacgtgccagcggcatgacaaccctctctgcagaactt tccagtcgactctcaacggcacccgacctgacagcgttcagcgacccgcg ccagttccccgcgctgccctccatctccgacccccgcatgcactatccag gcgccttcacctactccccgacgccggtcacctcgggcatcggcatcggc atgtcggccatgggctcggccacgcgctaccacacctacctgccgccgcc ctaccccggctcgtcgcaagcgcagggaggcccgttccaagccagctcgc cctcctaccacctgtactacggcgcctcggccggctcctaccagttctcc atggtgggcggcgagcgctcgccgccgcgcatcctgccgccctgcaccaa cgcctccaccggctccgcgctgctcaaccccagcctcccgaaccagagcg acgtggtggaggccgagggcagccacagcaactcccccaccaacatggcg ccctccgcgcgcctggaggaggccgtgtggaggccctactgaggcgccag gcctggcccggctgggccccgcgggccgccgccttcgcctccgggcgcgc gggcctcctgttcgcgacaagcccgccgggatcccgggccctgggcccgg ccaccgtcctggggccgagggcgcccgacggccaggatctcgctgtaggt caggcccgcgcagcctcctgcgcccagaagcccacgccgccgccgtctgc tggcgccccggccctcgcggaggtgtccgaggcgacgcacctcgagggtg tccgccggccccagcacccaggggacgcgctggaaagcaaacaggaagat tcccggagggaaactgtgaatgcttctgatttagcaatgctgtgaataaa aagaaagattttatacccttgacttaactttttaaccaagttgtttattc caaagagtgtggaattttggttggggtggggggagaggagggatgcaact cgccctgtttggcatctaattcttatttttaatttttccgcaccttatca attgcaaaatgcgtatttgcatttgggtggtttttatttttatatacgtt tatataaatatatataaattgagcttgcttctttcttgctttgaccatgg aaagaaatatgattcccttttctttaagttttatttaacttttcttttgg acttttgggtagttgtttttttttgttttgttttgtttttttgagaaaca gctacagctttgggtcatttttaactactgtattcccacaaggaatcccc agatatttatgtatcttgatgttcagacatttatgtgttgataatttttt aattatttaaatgtacttatattaagaaaaatatcaagtactacattttc ttttgttcttgatagtagccaaagttaaatgtatcacattgaagaaggct agaaaaaaagaatgagtaatgtgatcgcttggttatccagaagtattgtt tacattaaactccctttcatgttaatcaaacaagtgagtagctcacgcag caacgtttttaataggatttttagacactgagggtcactccaaggatcag aagtatggaattttctgccaggctcaacaagggtctcatatctaacttcc tccttaaaacagagaaggtcaatctagttccagagggttgaggcaggtgc caataattacatctttggagaggatttgatttctgcccagggatttgctc accccaaggtcatctgataatttcacagatgctgtgtaacagaacacagc caaagtaaactgtgtaggggagccacatttacataggaaccaaatcaatg aatttaggggttacgattatagcaatttaagggccaccagaagcaggcct cgaggagtcaatttgcctctgtgtgcctcagtggagacaagtgggaaaac atggtcccacctgtgcgagaccccctgtcctgtgctgctcactcaacaac atctttgtgttgctttcaccaggctgagaccctaccctatggggtatatg ggcttttacctgtgcaccagtgtgacaggaaagattcatgtcactactgt ccgtggctacaattcaaaggtatccaatgtcgctgtaaattttatggcac tatttttattggaggatttggtcagaatgcagttgttgtacaactcataa atactaactgctgattttgacacatgtgtgctccaaatgatctggtggtt atttaacgtacctcttaaaattcgttgaaacgatttcaggtcaactctga agagtatttgaaagcaggacttcagaacagtgtttgatttttattttata aatttaagcattcaaattaggcaaatctttggctgcaggcagcaaaaaca gctggacttatttaaaacaacttgtttttgagttttcttatatatatatt gattatttgttttacacacatgcagtagcactttggtaagagttaaagag taaagcagcttatgttgtcaggtcgttcttatctagagaagagctatagc agatctcggacaaactcagaatatattcactttcatttttgacaggattc cctccacaactcagtttcatatattattccgtattacatttttgcagcta aattaccataaaatgtcagcaaatgtaaaaatttaatttctgaaaagcac cattagcccatttcccccaaattaaacgtaaatgttttttttcagcacat gttaccatgtctgacctgcaaaaatgctggagaaaaatgaaggaaaaaat tatgtttttcagtttaattctgttaactgaagatattccaactcaaaacc agcctcatgctctgattagataatcttttacattgaacctttactctcaa agccatgtgtggagggggcttgtcactattgtaggctcactggattggtc atttagagtttcacagactcttaccagcatatatagtatttaattgtttc aaaaaaaatcaaactgtagttgttttggcgataggtctcacgcaacacat ttttgtatgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgaaaaattgc attcattgacttcaggtagattaaggtatctttttattcattgccctcag gaaagttaaggtatcaatgagacccttaagccaatcatgtaataactgca tgtgtctggtccaggagaagtattgaataagccatttctactgcttactc atgtccctatttatgatttcaacatggatacatatttcagttctttcttt ttctcactatctgaaaatacatttccctccctctcttccccccaatatct ccctttttttctctcttcctctatcttccaaaccccactttctccctcct ccttttcctgtgttctcttaagcagatagcacatacccccacccagtacc aaatttcagaacacaagaaggtccagttcttcccccttcacataaaggaa catggtttgtcagcctttctcctgtttatgggtttcttccagcagaacag agacattgccaaccatattggatctgcttgctgtccaaaccagcaaactt tcctgggcaaatcacaatcagtgagtaaatagacagcctttctgctgcct tgggtttctgtgcagataaacagaaatgctctgattagaaaggaaatgaa tggttccactcaaatgtcctgcaatttaggattgcagatttctgccttga aatacctgtttctttgggacattccgtcctgatgatttttatttttgttg gtttttatttttggggggaatgacatgtttgggtcttttatacatgaaaa tttgtttgacaataatctcacaaaacatattttacatctgaacaaaatgc ctttttgtttaccgtagcgtatacatttgttttgggatttttgtgtgttt gttgggaattttgtttttagccaggtcagtattgatgaggctgatcattt ggctctttttttccttccagaagagttgcatcaacaaagttaattgtatt tatgtatgtaaatagattttaagcttcattataaaatattgttaatgcct ataactttttttcaatttttttgtgtgtgtttctaaggactttttcttag gtttgctaaatactgtagggaaaaaaatgcttctttctactttgtttatt ttagactttaaaatgagctacttcttattcacttttgtaaacagctaata gcatggttccaattttttttaagttcactttttttgttctaggggaaatg aatgtgcaaaaaaagaaaaagaactgttggttatttgtgttattctggat gtataaaaatcaatggaaaaaaataaactttcaaattgaaatgacggtat aacacatctactgaaaaagcaacgggaaatgtggtcctatttaagccagc ccccacctagggtctatttgtgtggcagttattgggtttggtcacaaaac atcctgaaaattcgtgcgtgggcttctttctccctggtacaaacgtatgg aatgcttcttaaaggggaactgtcaagctggtgtcttcagccagatgaca tgagagaatatcccagaaccctctctccaaggtgtttctagatagcacag gagagcaggcactgcactgtccacagtccacggtacacagtcgggtgggc cgcctcccctctcctgggagcattcgtcgtgcccagcctgagcagggcag ctggactgctgctgttcaggagccaccagagccttcctctctttgtacca cagtttcttctgtaaatccagtgttacaatcagtgtgaatggcaaataaa cagtttgacaagtacatacaccataaaaaaaaaaaaaaaa
Rather than pasting a sequence, you can choose to upload a text file containing the sequence. Upload sequence:
Only DNA sequences of 25,000 or fewer bases and protein or translated sequence of 5000 or fewer letters will be processed. Up to 25 sequences can be submitted at the same time. The total limit for multiple sequence submissions is 50,000 bases or 12,500 letters.
BLAT is not BLAST. DNA BLAT works by keeping an index of the entire genome in memory. The index consists of all non-overlapping 11-mers except for those heavily involved in repeats. The index takes up a bit less than a gigabyte of RAM. The genome itself is not kept in memory, allowing BLAT to deliver high performance on a reasonably priced Linux box. The index is used to find areas of probable homology, which are then loaded into memory for a detailed alignment. Protein BLAT works in a similar manner, except with 4-mers rather than 11-mers. The protein index takes a little more than 2 gigabytes
BLAT was written by Jim Kent. Like most of Jim's software interactive use on this web server is free to all. Sources and executables to run batch jobs on your own server are available free for academic, personal, and non-profit purposes. Non-exclusive commercial licenses are also available. Contact Jim for details.