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UCSC Genome Browser on Human May 2004 Assembly
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Chromosome Color Key:
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Tracks with lots of items will automatically be displayed in more compact modes.
Mapping and Sequencing Tracks
Base Position
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Chromosome Band
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STS Markers
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RGD QTL
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FISH Clones
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Recomb Rate
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Map Contigs
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Assembly
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Gap
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Coverage
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BAC End Pairs
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Fosmid End Pairs
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GC Percent
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WSSD Duplication
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Short Match
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Restr Enzymes
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Genes and Gene Prediction Tracks
Known Genes
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CCDS
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RefSeq Genes
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Other RefSeq
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MGC Genes
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Vega Genes
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Vega Pseudogenes
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Ensembl Genes
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AceView Genes
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ECgene Genes
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Twinscan
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N-SCAN
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SGP Genes
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Geneid Genes
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Genscan Genes
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Exoniphy
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Augustus Genes
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Retroposed Genes
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Superfamily
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Yale Pseudo
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EvoFold
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sno/miRNA
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T-ScanS miRNA
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ExonWalk
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mRNA and EST Tracks
Human mRNAs
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Spliced ESTs
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Human ESTs
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Other mRNAs
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Other ESTs
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H-Inv
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TIGR Gene Index
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UniGene
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Gene Bounds
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Alt-Splicing
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Expression and Regulation
Gstone Arrays
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Allen Brain
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GNF Atlas 2
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GNF Ratio
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Affy HuEx 1.0
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Affy U133
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Affy GNF1H
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Affy U133Plus2
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Affy U95
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CpG Islands
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FirstEF
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5x Reg Potential
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TFBS Conserved
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Affy Txn Phase2
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SGMO/EIO CD34 HS
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NHGRI DNaseI-HS
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Comparative Genomics
Conservation
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Most Conserved
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Fugu Blat
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Fugu Chain
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Fugu Net
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Tetraodon Ecores
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Tetraodon Chain
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Tetraodon Net
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Zebrafish Chain
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Zebrafish Net
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X. tropicalis Chain
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X. tropicalis Net
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Chicken Chain
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Chicken Net
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Opossum Chain
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Opossum Net
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Rat Chain
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Rat Net
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Mouse Chain
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Mouse Net
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Cow Chain
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Cow Net
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Cow BAC Ends
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Cow Synteny
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Dog Chain
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Dog Net
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Rhesus Chain
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Rhesus Net
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Chimp Chain
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Chimp Net
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Variation and Repeats
SNPs
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Tajima's D SNPs
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Tajima's D
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Recomb Hotspots
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Segmental Dups
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RepeatMasker
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Simple Repeats
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Self Chain
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ENCODE Regions and Genes
ENCODE Regions
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Gencode Genes
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Gencode Introns
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EGASP Full
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EGASP Partial
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EGASP Update
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GIS PET RNA
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Known+Pred RNA
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TBA23 EvoFold
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ENCODE Transcript Levels
Affy RNA
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BU First Exon
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Riken CAGE
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Stanf Promoter
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Stanf RTPCR
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Yale MAS RNA
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Yale MAS TAR
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Yale RNA
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Yale TAR
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ENCODE Chromatin Immunoprecipitation
Affy pVal
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Affy Sites
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Affy Strict pVal
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Affy Strict Sig
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Affy Strict Sites
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GIS p53 5FU HCT116
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GIS STAT1 HeLa
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LI ChIP Various
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LI gIF ChIP
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LI Ng gIF ChIP
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LI Ng TAF1 IMR90
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LI Ng Validation
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Sanger ChIP
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Sanger ChIP Hits
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Stanf ChIP
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Stanf ChIP Score
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UCD Ng ChIP
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UT-Austin ChIP
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Uppsala ChIP
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Yale ChIP pVal
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Yale ChIP Sig
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Yale ChIP Sites
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ENCODE Chromosome, Chromatin and DNA Structure
BU ORChID
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NHGRI DNaseI-HS
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Stanf Meth
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Stanf Meth Score
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UNC FAIRE
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UVa DNA Rep
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UVa DNA Rep Seg
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UVa DNA Rep Ori
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UVa DNA Rep TR50
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UW/Reg DNaseI Sens
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UW/Reg DNaseI HSs
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UW/Reg Q/A
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ENCODE Variation
NHGRI DIPs
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HapMap Coverage
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Sanger Assoc
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HapMap SNPs
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